MmuINT0073458 @ mm10
Intron Retention
Gene
ENSMUSG00000027883 | Gpsm2
Description
G-protein signalling modulator 2 (AGS3-like, C. elegans) [Source:MGI Symbol;Acc:MGI:1923373]
Coordinates
chr3:108696949-108697636:-
Coord C1 exon
chr3:108697528-108697636
Coord A exon
chr3:108697079-108697527
Coord C2 exon
chr3:108696949-108697078
Length
449 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
GAAAATGCTTGTGGTTACAGGTT
3' ss Score
5.43
Exon sequences
Seq C1 exon
GATTGGTGAAGGAAGAGCGTGTTGGAGCTTAGGAAACGCATACACAGCTCTGGGAAATCATGACCAAGCAATGCATTTTGCTGAAAAGCACTTGGAAATTTCAAGAGAG
Seq A exon
GTATGAAACAAAAGAAATCGCCATGCATCCTGTTAGACTTTTCAAGTCAGTGACGGGGTAGGGTGTTTTCCCAGTGTTCAGAGAGCTGTGTAAACAGATAGATGACTGTATTGCTGGACCTAGGGAGACAGCACAGTGAGCTGAGCCACGTGGGGATAGGATGCTATTACTCCATCCTCTTTGTTTCATGTCATAGTTTTTAAAGAAAATATTGGTTAGAACTAAGGACTGACTGGCTCGTGTTACACCTGATGGGTATTTGAGCTTAGATACCTCTTCTCAGCTTCATGTCCCGTCCCTCGTATAGGAAATGGGAATGGCCATAGATCCTGTGGAAGTTGGGTATGTACGTATGTATGTATGTGTGCATGCATGCACGCATTCGTGCATACACACATGTGCATGGTGAACTAATGTCACTCTGACGTGGAAAATGCTTGTGGTTACAG
Seq C2 exon
GTTGGGGACAAAAGTGGTGAACTGACTGCGCGGCTGAACCTCTCAGACCTGCAGATGGTTCTTGGTCTGAGCTACAGCACAAATAATTCCATGATGTCTGAGAACATTGAAATTGATGGCAGCTTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027883:ENSMUST00000029482:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.023
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(55.2=86.5)
A:
NA
C2:
PF134241=TPR_12=PD(41.4=54.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGTGAAGGAAGAGCGTGT
R:
CATGTAAGCTGCCATCAATTTCA
Band lengths:
238-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types