RnoINT0067141 @ rn6
Intron Retention
Gene
ENSRNOG00000012149 | Gpsm2
Description
G-protein signaling modulator 2 [Source:RGD Symbol;Acc:1560967]
Coordinates
chr2:211503903-211504577:-
Coord C1 exon
chr2:211504469-211504577
Coord A exon
chr2:211504033-211504468
Coord C2 exon
chr2:211503903-211504032
Length
436 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
GAAAACGTCTGTGGTTACAGGTT
3' ss Score
5.26
Exon sequences
Seq C1 exon
AATTGGTGAAGGGAGAGCGTGTTGGAGTTTAGGAAATGCATACACGGCTCTAGGAAATCATGACCAAGCAATGCATTTTGCTGAAAAGCACTTGGAAATTTCAAGAGAG
Seq A exon
GTATGGAACAAAAGACGTTGCTGTGGGTCCTGGTAGCATTTACAAGTCAGTGACGGGGTAGGGTGTTCCCAGTGTTCATAGAGCTGTGTAAACAGATAGATGACTTGATCCAGGGAGACAGTACGGTGAGCCGAGGCACGTGGGAATAGGATGTTACCAGAATACCCATCTTCCTACCCTCGTTTCTATGTAGAGAAGTATCATAGTTTTTAAAGAAAAAGCCGTTTTAGAATCAAGGGCTGACTGGCTCTTGTTAACACCTGATGGGTGTTTGAGCTTAGAAACCTCTCTTGAGCTTCATGTCCCTCGTATAGGAAATGGAAATGGTCATAGATACCGTAGGAATGGGTTATGTATGTATGCATGTACGTATATATGCATACATGTGCATGGTGAACTGATGTCTCTCTGATGTAGAAAACGTCTGTGGTTACAG
Seq C2 exon
GTTGGGGACAAAAGCGGCGAGCTGACTGCACGGCTGAACCTCTCAGACCTGCAGATGGTTCTTGGTCTGAGCTATAGCACAAATAATTCCATGATGTCTGAGAACATCGAAATCGATGGCAGCTTACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012149:ENSRNOT00000066178:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PU(55.2=86.5)
A:
NA
C2:
PF134241=TPR_12=PD(41.4=54.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTGGTGAAGGGAGAGCGTG
R:
CATGTAAGCTGCCATCGATTTCG
Band lengths:
239-675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]