BtaINT0068790 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021658 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr5:28022285-28023609:-
Coord C1 exon
chr5:28023507-28023609
Coord A exon
chr5:28022379-28023506
Coord C2 exon
chr5:28022285-28022378
Length
1128 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
ATCCCCTCTCTGCTTGGCAGGGG
3' ss Score
7.83
Exon sequences
Seq C1 exon
ACGTATGGCCTTCACCATCGAGAGGAGCAGCGTGTGGAGATGGTGACCTTTGTCTGCCGGGTTCATGAGTCCAGCCCTGCCCAGCTGGCAGGGCTCACACCAG
Seq A exon
GTGGGGCCTGAGCCCAGGACACGGGGCTCTGGGAAGGGAGTATGACCTTATTCCCAAGCAGATGGGGCAAGAAATCCAATCAGTTCTCCTTCCTCCTCCTATTTCGAGAAGGCCAGAAAGAAGAATGAGTTGGTAGATTTACCATTTACTGTATGATCTTGAATATTCCCAACACTGGAGGCAGTAACATGTCCTCATATCAGTGTGGTGAGGGGCTTTCCTGGGCACAAAGCCAGGGCCTGCCTGGGAAATGGCAGATATTGCCACAGCTATTCTGCCTCCTCCTGGCGATCTGGCAACCCAGCATGGGCAGGAGTCATCGAGAGAGCAAGTCCATCGTGTTTCCAACCTGGCCCAGTACTGGGGTACTTATGATACTTCCTCTAACAAGGACATGGTGCTGCCAGTAGGAGACCTTTGGGACTGGCCAAATCTAGAGCCCCAAGTCCCGGAAGGGGCAGCCTGAGACTGCACGAACTGAGCACCCTCGCCACCCCCCCTCCAATTCTATACCCATTTTCTTTCTGGAAGCCTTCATCTCCTTGCCCATTCACCAGCAGCCTCTGGTAGCTAAGTGGTATACTGCAGCTTTGCAAGATGGTTTCTCATCCCCTTGGTAGCCACCACAGGGGTCCACCCCTCCTTTTCCAATTGGGCAGTGGGTCCTAAGAGAGGGTGGTCTGCTCTGCTGGAGGTCGGGAGGCTCTGCAGCAGCCTAGGGTGTCAGAGGTTGAGGCCTCAAGCTTGGGAGCCAGTGTTAACGTTCCCGGCGTGGTGCTCCTCACCCTCCTGCCTTCCTGTCTCAGCTGGGTTTCTCTGGTGACAGCCTGTGGGCTGGACCGAAATAACCAGCTCTGGGGGAAGCCCAGGCTTGCTGGGAGGGCTCAGCCTTTGGGGACAGAGCTTCCTGAGAGTGAGATGAGGATGAGGATGTGGATGTTTGAGGGTCCTGGCCCCTATGCTAGGGTGCCAGGTCTGCACAAGATCGCCCCAGAACCATGAGTGGGGGTAGGAAGCTCAGGAGAGTTCTGTGGGGTTATTACCCCTACCCTTTGTGGTGAAGATAGGGGACTGAAATTCTTCCACACGCCCCGTGGAGCAAATGCTGATCCCCTCTCTGCTTGGCAG
Seq C2 exon
GGGATACCATTGCCAGCGTCAACGGCCTGAATGTGGAAGGCATCCGACATCGGGAGATTGTCGACATCATTAAGGCATCTGGCAACGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021658:ENSBTAT00000028862:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(39.1=100)
A:
NA
C2:
PF0059519=PDZ=FE(35.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTTCACCATCGAGAGG
R:
GAGAACGTTGCCAGATGCCTT
Band lengths:
190-1318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]