HsaINT0072113 @ hg38
Intron Retention
Gene
ENSG00000161835 | GRASP
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr12:52011039-52013780:+
Coord C1 exon
chr12:52011039-52011141
Coord A exon
chr12:52011142-52013686
Coord C2 exon
chr12:52013687-52013780
Length
2545 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
CCCCCTTGTCTGCCTGGCAGGGG
3' ss Score
9.42
Exon sequences
Seq C1 exon
ACTTATGGCCTTCACCACCGGGAGGAGCAGCGTGTGGAAATGGTGACCTTTGTCTGCCGAGTTCATGAGTCTAGCCCTGCCCAGCTGGCTGGGCTCACACCAG
Seq A exon
GTGGGGCCTGAGCCCAGGACACCCAGGTCTGGGAAGGGGATATGACCTTACTCCCAAGCAAAGGGGGTGAGCAATCTCTCCTGAAATCAATTCCTCTTCCTTTTCCTTCTTTGAGAAGGCCAGAAAGAAGAATGGATAGAATCTGGGCTTTGGATCTAGGCAAATTTGCCATGTACTGTGTGATCTTGCACAGCCCCATCTACAAAATGAGGGTAATAATGCATCCAAACATCACAGTGCGGCAAGGGGATTCCCTGGGCACACTGCCAGGGCCTAATTAATGGTGGATGATGCTGCTGCTGCTCTGATTCCTCCCAGCAACCCTGGCAGTCAGCATGGGCAGGAGCCAGGGAAGAAGCAACATTCCATTAAGTCTGTTTGATATTGGGGATCAGGCCAATCCTGCCCCAAAATGGGCCCAGTGCTGAGGAACCGATGTTACTCCCTTTTAAAAAATTAGAAACTTTTTTTTTTTTTAAGAGACAGGGCCTCAGTCTGTCACCCAGGCTAGAGTGCAGTGGCGTAATCATAACTCACTATAACCTTGAACTCCTGGGCTCAAGCGATCCTCCTCTTGCCTCTGCCTCCCAAAGCAATATGTTACTTCCTCTAACAAGGAAATTATGCTTCAGCAGGAGATCCCTGGATTGAGCAGATCTAGAGTCCCCAGGTTCCAGGAAGGGCAGCCTGAAACTGTATGAATCAATCCCCCCTCCACCATCTTTGCCCCTAAGCCCCTACCTCCTTCCCACTTACCAGCAGCCCGTGCTAGCTATCTTAGTCCATTTTCTGTTACCATAACAGAATACCTGATACTGGGTAATTATAAAGAAAAGAGGTTTATTTAGCTCATGGTTCTGGAGGCTGGGAAGTTCAAGACTGGGTGGCCGCATCAGGTGAGGGCCTCATGCTGCGTTCTGACATGATGGATGGCATCTCATGGCAGGAACGCCTGCAAGAGTGGTGAGTAGGCACACGCAAAAGAGACAAAACATGGGTGATCTTGCTTTATAGCAACCCACTCGCCAGGTAACTAAACCAGTCCTACCAGAGCAAGAACTCACTCCCCAAAAACAGCATGGATCCCTTCACTGGGCAGATCCTTCATGGCCCAAATGCCACTTTTTTTGAGATGGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGCATGATCTCAGCTCACTGCAGCCTCTGCCTCCCAGATTCAAGCAATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACTGGCCACCAAGCCCAGCTCATTTTTGTATTTTTAGTAGAGATGGGGTTTTGCCTTGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACGGCGCTCGGCCCCAAATGCCTCTTAAAGGTCCTACCATCTCTCAGCACTGTTACGTTGGGGATGAAGCCTCAACATGAGTTTTGGGGACAAACAATATTTAAATGGTAGCAGTAGCCAAGTGGTATACTACAACTTCTCAAAGTAGTTTCAAATCCACTCTCCCTCCCCATCATCCCTGAAGCATCCACAGCAGGGATCCATACCCCTTTTTACAGATAGGAATGGGGCCCTGACATGGGGCACACTGTGCTTGAGGTCAGGAAGCTCTCCAGTGGTGCAGGGTAGCAGAACTATCCCTCTGGGGGCCAGTCATTCCCTGTGCTTCTCTCCCACCACCAGAGGCTGGACTGATTATCTGTGGATCCATGAGGCCATGCCATGCCTGGGGCCAGGGTCGGTTCCCAGCTGGGTGCTGCTCACCTGCTCTTCCCTGAATTGACTGGGTCTTATGGCCAGCGTGGACTGGACAGAAATAACCAAATCTGAGGGTAGCCCAGGGTCCTGGGTGGGCTTAGCTTTGGGACAGAACTTCTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCGCCTCCCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGACTACAGGCGCCTGCTACCACGCCCGGCTAATTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGGCCGGACAGAACTTCTTGAGGGCAGAGTGAGGGTGTTGGGTGTGTGAGGTCCCCACCCTTTGGCTGGGGTGCTGGGCGTGGACAACCTGGTAGTCACTACAGGCCCACAAGAATGGCTGTGGTTCTGTGTGTTTGGATCGAGTATGAGAGATGTCAGAGGAGATCTACAGAGAACCATGAGGAGTTGGAGGAGGGAGTTCAGGAGTATTCCCTGGAGTTACTACCCACCCTTCTCCCCTTTCTGGCTAAGGTAGGAGGCTGGTATTCTAGCATGCCCCATGGAGCAAATCTAACCCCCTTGTCTGCCTGGCAG
Seq C2 exon
GGGACACCATCGCCAGCGTCAATGGCCTGAATGTGGAAGGCATCCGGCATCGAGAGATTGTGGACATCATTAAGGCGTCAGGCAATGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835:ENST00000293662:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=PU(36.8=95.5)
A:
NA
C2:
PF0059519=PDZ=FE(35.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development