RnoINT0067291 @ rn6
Intron Retention
Gene
ENSRNOG00000007346 | Grasp
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:RGD Symbol;Acc:70554]
Coordinates
chr7:142874246-142875804:+
Coord C1 exon
chr7:142874246-142874348
Coord A exon
chr7:142874349-142875710
Coord C2 exon
chr7:142875711-142875804
Length
1362 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGC
5' ss Score
6.99
3' ss Seq
ACTTCTGCTCTTCTTGACAGGGG
3' ss Score
9.59
Exon sequences
Seq C1 exon
ACTTATGGCCTTCACCACCGAGAAGAGCAGCGTGTGGAGATGGTGACCTTTGTCTGCCGAGTTCACGAGTCCAGCCCTGCCCAGCTGGCTGGGCTCACGCCTG
Seq A exon
GTAGGCCTTGAGCCCAGAGTACACAGGGCTCTGGGGGCAGTGCATAACTTTACTCTTAAGCAGAGGCATTTTCTCCCCCTCCTTCATCCTCCAACTTGGAGAAGGCCGGAAGAATTAACAGAATCCTGAAATGGGATTTGGACGCACCGGCCATTGACTGTGGGACCATGTGCAGGTCTTTTGCAAAATAGGACGGGCAAAAGCGTGCGTGGCGAAGCCAGGGGAAAGCGATTCTTCTTGCGAGCAGCTGTTCTACCTCCTGGCAGCTGTGCAACCCAGCTGGGCAGATTCTGGTAGAGAAGTATTCTCTACCAGGGTCTGCCTCACAATGGTGCATGAGGACCTATCCTTCTCCAGCTGGGGCACCTGTGCTGTGCCCTTCATCCAGGAGTCAAATGATGGAGACCCTAAGGTCCCAGTCTGCCAGCCTGAGGCTCCATGAATCCACACATATTCTGTCAGCACAGTTGCCCCTTGGCCCTTACCTTCTTGCCCACTTGCCTGGAGCCTGGGCCAGCTCCCAGTTGGGTACCTGTTCACCCAATGCCTCACCTGTATGGACTGACTCTTGTGACAGGTGTGGGTTAAACAGAAACAGCTGACTCCAGGAGCAGCAAAGGCACCTGGGAGGGCTCTGTGTTGAGGGAGAGAGATTCCTGAGGGTATGCATATTTGATAACTCATTTCTTCTCAAATCCCTGGAATCTAGCATAGGTTCCTCTATCCACACAAGCTGGTGGTCTCTGTTCAGGGAGAAAAGGTTGTGGTTTTATGTATTTGTCATTGTTTTATTTTGTTCTGCTTTGTTTTTTTGTTTTTTTGTTTTTTTTTTTTGTTTGTTTTTTTGTTTTTTGTTTTTTTTGAGAGAGGGTTTCTCTATGTAACAGCCCTGGCTGTCCTGGAACTTGCTATGTAGACCAGACTGGCCTCAGATTCATGGAGATTTGCCTGTCTCTGTTTCCCAAGTGCTAGGAGTCCATTAAAGGCATGTAACACCATGCTGGGCTAGGTTTTAGGTTTTGTTTGTTTCTTAGTTTTGTTTGTTTGTTTGTTTGTTTGTTGAGACAGTGTTTCTCTGTATGGCCTTGGCTATCCTGGAATTTGCTCTGTAGACAAGGCTGGCCTCAAACTTACAGAGATCTGCCCGCCTCTGCCTCCCAAGTGCTGGGGATTAAAGAATGTGCCACCACTATCACCCAACTGGTTTTTGTGTGTTTTGAGTGGGATAAAGGAGATAGATGCCCAGGTCTCCCCACCACTGTGGAAATCAGTGGTTCTCCAGGTCACCATCCTGCCCTTAATGGCTGGAGCCCTTCCTCCATGCCCTGGGAAACAGATACTGACTTCTGCTCTTCTTGACAG
Seq C2 exon
GGGACACCATCGCCAGTGTCAATGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTGGATATCATCAAAGCATCTGGCAACGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007346:ENSRNOT00000009979:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(39.1=100)
A:
NA
C2:
PF0059519=PDZ=FE(35.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCCTTCACCACCGAGAA
R:
CTGAGAACGTTGCCAGATGCT
Band lengths:
194-1556
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]