MmuINT0073611 @ mm9
Intron Retention
Gene
ENSMUSG00000000531 | Grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:MGI Symbol;Acc:MGI:1860303]
Coordinates
chr15:101059422-101061058:+
Coord C1 exon
chr15:101059422-101059524
Coord A exon
chr15:101059525-101060964
Coord C2 exon
chr15:101060965-101061058
Length
1440 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
ACTTCTGCTCTTCCTGGCAGGGG
3' ss Score
10.22
Exon sequences
Seq C1 exon
ACATATGGCCTTCACCACCGAGAGGAGCAGCGTGTAGAGATGGTGACCTTCGTCTGCCGAGTTCATGAATCCAGCCCTGCCCAGCTGGCTGGGCTCACGCCAG
Seq A exon
GTAGGCCTTGAGCCCAGAGTGCACAGGGCTCTGGGGGAAGTGCATAACTTTACTCCTAAGCAGAGGCGTTTTCATTTTCCTCCTTCACCCTCCAACTTGGAGAAGGCCAGAAGAATTAACAGAATCCTGAGTGTGGATTTGGACACACTGGCCATTTACTGTGGGGCCGTGTGTGGTTCTTTTGCAAAACAGGGCAGGCAACAGTGTGGCGCGGTGGCGGTACCCTGAGCCCAAAGCGGAAACCCCGGAAAAGCAGTGCTGCTTGTGAGCAGCTGTTCTGCCTCCTGGCAGCTGTGCAGTCCAGCTGGGCAGAATCTGGTAGAGAAGCATTTTACCAGGTCTGCCTCAAAGCGGTCCATGAGGGCCTGTCCTTCTCCCGATGGGGCACCTGTGCTGTGTCCTTCATTGAACGATGGAGACCCGGAGATTAAGGTCCCAGTCAGCCAGCCTGAGGCTCCCATGAACCCACATCTATTCTGTCAGCACAATTGCCCCTTGGCCCTTACCTTCTTGCCCACTTACCAGCGGCACTTTGCTAGGTAGTTCCTGACTGCCCTTGATGTAGCCACAGCAAGGATCCACACGCCTTACAGATGTCAAACGAGCACCCCCAGGTGTGAGCATGAAATCTCTCGTGCCTGGAGCCTGGGCCAGCTCCCAGTTGGGCACTGTTCATCCTATATGCCTTACCTGTATCGAATGATTCTCATGACAGGTGTGAGTTAAACAGAAACAGCTAACTCCGGGAGGGGCCTGGGAACCTGGGAGGGCTCTGTGATGGGGGAGAAGAGATTCCTGGGGGTATGCATATGCCAAAACTCACTTCTTCTCAGATCCCTGGAAGCTAGCATAGGTTGCTATATCCAGACAAGCTGGTGGTCTCTGTTCAGGGAGAAATGGCTGTGGGTTTGTGTATTAGTTGTTTTTTTATTTTGTTTTGTTTTTCAAGACAGGGTTTCTCTATGTAACAGCCCTGACTGTCCTGGAACTTGCTATGTAGTCCAGATTGGCGTCAAACTCATGGAGATTTGCTTGCCTCTGTCTCCCAAGTGCTGGGAGTACATTAAAGGCCATGTACCACCATGCCGAACTAGGTTTTAGGTTTTGTTTGTTTCTTAGTTTTGTTTGTTTGCTGAGACAGTGTTTCTCTGTATGGCCTTGGCTGTCCTGGAATTTGCTCTGTAGATCGGGCTGGCCTCAAACTTAGAGAGATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGTGTTGCCACCCTTCCCCCACAACTGGTTTTGTATATTTTGAGTAGAGAAAAAGAGATGCCCAGGTCTTCCACCACTGTGGAAGTGAGTTCTGGGTGGTTTCTCCAGGTCACCATCCTGCTCTTTCTGGCTGGAGCCTTTCCTCTATGCCCTGGGAAACAGATACTCACTTCTGCTCTTCCTGGCAG
Seq C2 exon
GGGACACTATTGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATATCATCAAGGCGTCTGGCAACGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000531-Grasp:NM_019518:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.086 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(39.1=100)
A:
NA
C2:
PF0059519=PDZ=FE(35.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGGCCTTCACCACCGAGA
R:
CTGAGAACGTTGCCAGACGC
Band lengths:
195-1635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: