BtaINT0068791 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021658 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr5:28022120-28022378:-
Coord C1 exon
chr5:28022285-28022378
Coord A exon
chr5:28022187-28022284
Coord C2 exon
chr5:28022120-28022186
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TGATTCCCCTGTCTCCTCAGACT
3' ss Score
9.38
Exon sequences
Seq C1 exon
GGGATACCATTGCCAGCGTCAACGGCCTGAATGTGGAAGGCATCCGACATCGGGAGATTGTCGACATCATTAAGGCATCTGGCAACGTTCTCAG
Seq A exon
GTACATCCAGGTGTTGTGGTCTCTAGGGGATTCCTGAGCGCAGCCTTTCTTCCCCACCCTGTGGGCCCACTCATCCTTTGATTCCCCTGTCTCCTCAG
Seq C2 exon
ACTGGAAACTCTGTACGGGACATCAATTAGGAAGGCGGAACTGGAGGCTCGTCTGCAGTACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021658:ENSBTAT00000028862:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
NA
C2:
PF0059519=PDZ=PD(4.6=17.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATACCATTGCCAGCGTCAA
R:
TACTGCAGACGAGCCTCCAG
Band lengths:
153-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]