HsaINT0072114 @ hg38
Intron Retention
Gene
ENSG00000161835 | GRASP
Description
general receptor for phosphoinositides 1 associated scaffold protein [Source:HGNC Symbol;Acc:HGNC:18707]
Coordinates
chr12:52013687-52013943:+
Coord C1 exon
chr12:52013687-52013780
Coord A exon
chr12:52013781-52013876
Coord C2 exon
chr12:52013877-52013943
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CTTTGATTCTCCAACCTCAGACT
3' ss Score
5.7
Exon sequences
Seq C1 exon
GGGACACCATCGCCAGCGTCAATGGCCTGAATGTGGAAGGCATCCGGCATCGAGAGATTGTGGACATCATTAAGGCGTCAGGCAATGTTCTCAG
Seq A exon
GTATGTCTGGGAGCCGAGGTGCCTGAATTCCTGAGCTCAGCCTCTTGGTATTTCCTCAGCCTGTGGCTCACTCAGGCTTTGATTCTCCAACCTCAG
Seq C2 exon
ACTGGAAACTCTATATGGGACATCAATTCGGAAGGCAGAACTGGAGGCTCGTCTGCAGTACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835:ENST00000293662:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
NA
C2:
PF0059519=PDZ=PD(10.5=17.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCGCCAGCGTCAATG
R:
AGGTACTGCAGACGAGCCTC
Band lengths:
152-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development