MmuINT0073612 @ mm9
Intron Retention
Gene
ENSMUSG00000000531 | Grasp
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:MGI Symbol;Acc:MGI:1860303]
Coordinates
chr15:101060965-101061222:+
Coord C1 exon
chr15:101060965-101061058
Coord A exon
chr15:101061059-101061155
Coord C2 exon
chr15:101061156-101061222
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTATCC
5' ss Score
7.91
3' ss Seq
TGTCCCCCTCTATCCCCCAGGCT
3' ss Score
10.67
Exon sequences
Seq C1 exon
GGGACACTATTGCCAGCGTCAACGGTCTCAACGTGGAAGGCATCCGGCACCGGGAGATTGTCGATATCATCAAGGCGTCTGGCAACGTTCTCAG
Seq A exon
GTATCCGTGTCTAGGTGCAGTGCCTAAGGGCTCCTGAGTTTGTGGTGCTTCCTCAGCCTCCAGGCTCGCTCAGCCTTTGTCCCCCTCTATCCCCCAG
Seq C2 exon
GCTGGAAACTCTGTACGGGACGTCCATTCGGAAGGCAGAACTGGAGGCGCGCCTGCAGTACCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000531-Grasp:NM_019518:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
NA
C2:
PF0059519=PDZ=PD(4.6=17.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACTATTGCCAGCGTCAA
R:
CTTAAGGTACTGCAGGCGCG
Band lengths:
160-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: