HsaINT0072114 @ hg19
Intron Retention
Gene
ENSG00000161835 | GRASP
Description
GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein [Source:HGNC Symbol;Acc:18707]
Coordinates
chr12:52407471-52407727:+
Coord C1 exon
chr12:52407471-52407564
Coord A exon
chr12:52407565-52407660
Coord C2 exon
chr12:52407661-52407727
Length
96 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
CTTTGATTCTCCAACCTCAGACT
3' ss Score
5.7
Exon sequences
Seq C1 exon
GGGACACCATCGCCAGCGTCAATGGCCTGAATGTGGAAGGCATCCGGCATCGAGAGATTGTGGACATCATTAAGGCGTCAGGCAATGTTCTCAG
Seq A exon
GTATGTCTGGGAGCCGAGGTGCCTGAATTCCTGAGCTCAGCCTCTTGGTATTTCCTCAGCCTGTGGCTCACTCAGGCTTTGATTCTCCAACCTCAG
Seq C2 exon
ACTGGAAACTCTATATGGGACATCAATTCGGAAGGCAGAACTGGAGGCTCGTCTGCAGTACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000161835-GRASP:NM_181711:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0059519=PDZ=FE(35.6=100)
A:
NA
C2:
PF0059519=PDZ=PD(10.5=17.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCGCCAGCGTCAATG
R:
AGGTACTGCAGACGAGCCTC
Band lengths:
152-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)