BtaINT0071384 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004746 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:HGNC:16878]
Coordinates
chr19:63795162-63797249:-
Coord C1 exon
chr19:63797059-63797249
Coord A exon
chr19:63795370-63797058
Coord C2 exon
chr19:63795162-63795369
Length
1689 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TGTTTCTTGTAATAACCTAGGTG
3' ss Score
6.89
Exon sequences
Seq C1 exon
TTCAGCCCAATCCCTCTGTGCTTATTGGCAATCCTATCAGAGCATATACTCCTCCACCTCCTCTTGGACCTCACCCAAATTTGGGGAAATCTCCAAGTCCTGTTCAAAGAATCGATCCTCACACTGGGACGAGTATTCTTTATGTACCTGCTGTCTATGGAGGGAATGTCGTTATGTCGGTGCCTGTACCT
Seq A exon
GTAAGTAGCTGTTTTTAAGATACTCTCTATCGAATGAGATAAAATAGGATTCACTAAATTCCTACCCAAATAGTGTTCTACCAGTCTCTCTTTTCAGCTTTTCAGTGCCTGTAAGCTTCTTTAAAAGCAGCTCTTATGGCCCCAAAAATGTGAATTGTTGCTTACAGTTTGTTACTGGATTGTCAGTGGCTGTCAAGAAATCTGTAGATTGGATGTTTTGATTGAGAAGCCTTTGTATTGTTTTAAATATTTTTACTGGGAAAAGTTGGGCTAAAAGTTAACAGAGCTAGTAAATTGGACTCTTGTTTTGTAAAGTGATGTTTTTATTTTATCTTTTGCCTTTTCATTCTTCTATAATTTACTAGCGCTCCCTAAGAAGGAGACAGAAAGGCACAGAGCAGTCTAGCTCCCTTGGATCTAAACATATCTGAGGAATTCCACGCCTTCCTTGCAAAATCCTGCCTGTACTTAAAAACATTATTAAATCATTTCTAAGACTGCCTAGATTTTTAGAGGGTTTCCAACTTATGTAAAACTCATTTTTATTTTCTTTAAGATTTTTGAATATTTTGGTAAGTGAAAAATTTACTGTTAAACAAATATTTCCAAATTCAGGAATTTTTAGCCTAGAAAATATTTCTTTCATTTAAGACAAGTGCTATAATTTCAAATGGAGGTGATCACTGTCAAGGATCTTGGACACCCCTGTCCACACTCCCAAAATGCAAAAATGCATAGCTGCTGGCATTTTTCAGCCGTATTGGTCATGATAGTTCACAATCACGGCAGCCAGGGAGGATAACTGTCAATAAGAAGTATCTCATTTATGTCGACTCCCCATAGACTTTGAATTTTAGCTGAGTTATTTCTTCCCAGACAGCCTGGCAACATTATACATCATCTGCTTTAAATAGTAAGTCGCTTAGGATCTAGATTTCATTTCGCTAGGTCACAGAGGCTTTTATTATATAAGATTTCTAAGAGTCTGCATTTAACAGTTAGATTCAAATAATAGAGATGGTAGCTCAGATGTCATCATATTTATTCCTTTTGTGTTAATATGCAGCAATTATATATTTAGACACACCTAAAGAAATTTTCTGTTTCTGTAGTTTAATTAATCAGAAGCATTAGTTAAATTAGTGACCTGTTTGAATTTTGCTGACAGTAAATGAACCTTAAATGATTTGGTTAGTCATATAAAAGAGTAGTAATACATATTTTTTTGGGTTGAGACTCTTTAGACTGAATTCTTTCTTAAATTTTTTCCCTGTTCTTTTATTCAAGTTTATTAAACCATATATCTATACAGTTATGACTTTAAAAGGCAATTTTCATGGTAATCTGTTACATATGTACATTCATATTGAAGGAAAATGATTCAAGTCTATAAAATGATTCGATGCCTCAAAAAATAATTGTTAATACCTATTTTAAGTCCTTGATTTCTTCCTAACCTAGTGTATACAGGAAATGATCAATTTTCCCCTCCACACTAAAGATTCAAAGAGCTAGTTAAGATACAACCATCATTCTACCAGTTGTTACCACCAGCATTCGTTTTGTAGTTATTCAGTTTGGTAGAATTAACATCTCTGTGTGTTTGCTCTTTCCTAATTAATAGCACTATAGCAGTTTGACTGCCAAAATGCCCTTAAAGCAATTACTTTGTTTCTTGTAATAACCTAG
Seq C2 exon
GTGCCATGGACAGGATACCAGGGCAGGTTTGCGGTTGATCCTCGAATCATTACACACCAGGCAGCAATGGCCTACAACATGAACCTCTTACAGACACATGGACGTGGGTCTCCTATTCCTTATGGCCTTGGGCACCACCCACCTGTCAGCATAGGGCAGCCACAGAATCAGCATCAGGAGAAGGATCAACATGAGCAAAGTCGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004746:ENSBTAT00000006233:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.800
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAATCCCTCTGTGCTTA
R:
GATTCTGTGGCTGCCCTATGC
Band lengths:
357-2046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]