RnoINT0070078 @ rn6
Intron Retention
Gene
ENSRNOG00000003213 | Helz
Description
helicase with zinc finger [Source:RGD Symbol;Acc:1307049]
Coordinates
chr10:95882386-95884361:+
Coord C1 exon
chr10:95882386-95882576
Coord A exon
chr10:95882577-95884153
Coord C2 exon
chr10:95884154-95884361
Length
1577 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTGTTTCTTGTAATAACCAGGTG
3' ss Score
7.51
Exon sequences
Seq C1 exon
TTCAGCCCAACCCTTCCGTACTTATTGGCAATCCTATTAGAGCATATACTCCTCCACCCCCTCTTGGACCGCACCCAAACTTGGGGAAATCTCCAAGCCCCGTTCAAAGAATAGACCCTCACACTGGGACTAGTATTCTTTACGTTCCTGCTGTCTATGGAGGGAATGTAGTTATGTCGGTGCCTTTACCT
Seq A exon
GTAAGTGGACGTTTCAAATACTTTCTCCTAAATAAGTAGCGGCAGTCCAAAGAGTGTTTGCCAACCTTTGCTTTTCAGGGCTGGGCATCGAACCAAGGGCCAAGGGCGTGCTCAGCCCTCACTGCTGAGCCACACCCTCACACTTTTATTTTATCTTTGCCTTTGCAGCATTCATAAAGTGATTCATGTTTAATTATTAAGTTTTGGAATGACCAAGAGTGTGTATTATTATATGTAATTGGTTTATCAGAGACTACGAAGAAGTCATGGATCTCCTGTTTTGATTCAGAAGCCTTTGAAATCTTCTAAAATGTTTTCCTCTGAGGAGAATGGTATAATCGATGTTTCTGTTTTGTCTTCTGCATTTTATTCTCAGTCATGAACTGTTCCTAAGCATCAGGGTTATTGAGGAGCCAGGGACCTTCGGCTCTCTTGGGTCTGAACTGGTCTGGGGGAACCCACACTGGATGAAACATTAGTGCCACACTACTGAATTCTGAGAAGAGGCTTTTAGAGGGCTTCCATATGATTCACAAATCCACTTTTACTTCCTTTTTGAAATGTTTGGTGGTTATTTTTTTAACTTGTAAATATGTGAATATTTCTAAATTTAGAAGTTTTAGCCTAGGAAAAATTTGATTCAAGTGAAGTTGTTTGAGTGAGAGGTGATCTTGTCAGAGTGCTTTGACACTCCTGCCTGCACCCACAAAGAGAACTGCTGAACTGCAAGCATTCTCATCCTGCGGTAGTCACAGCCTAGCAGCCAAGCAGAGGAATTGTCAGAGGCGAGGGTTTCTCGCCTGCACCTCAGATGCTTCTGATTGTAGCTGTTTCTTTCTGGACAGCCTTGCGACATGATACATGGTCTGCTTTAACAGTCTGTCTAACAGGATTTCTATTTCATTTTACTAGGTCAGAGAAGCTTTTAGGATGTAAGATCTCTGAGATCTGTGTTCAGGAGTAAAACAGTGACAATACCAGTTGTCATTGTCATTCCTATATCTAGGCAAGCTCTTCTGCCTTTGTGATTTAAGGTAGAGTTGAGTCTATCAAAATTTAAATAATGACCTGTTTTTGCCTGCCGTGAGTGAGCATTGGCTAAGTGTTGCTCATGTAAGTTTAGAGTACACTCTTTGAGTTGAGACTCCTTAGTTTCCTCCTGCAACCCTAAAGCAGCCTGTTAAACTAAGTAACCATGAAGCTTGTTTAGAGGTCATTTTCAGGACAACCTGGGACAGGTACACCCATGTGAAGGGGAAAGGATTCAGGGGTGTAAACTGCTTTGATATCTTGGGCAATAGTACTAGTTTCAAGTCCTCATTTTCTTGTAACTCCCATTTTTCTTAACATGCGAATTCAGTGTTCCATTTTCTGTAACCTGCTAAGGGTTTTGAGAGCCAGGTTTTGGCCAGTAAGGATATAAAGCAGTTCTACCCATCTTCCTGTAGAGTGATGAGCATGGTATTTGAGTGAAAGTGTCATCTCTGTGTAGTTGCTTTTGCTAATCTGCAGCACTGTGTCAGTTTGTGTTCAGAAACATTGCTCAGTTCGATTGCTTTGTTTCTTGTAATAACCAG
Seq C2 exon
GTGCCGTGGACAGGGTACCAGGGTAGGTTTGCAGTTGATCCTCGGATTATTACACACCAGGCAGCGATGGCCTACAATATGAATTTGTTACACACACATGGGCGTGGGTCGCCAATCCCTTATGGTCTTGGACATCACCCACCTGTCAACCTAGGCCAGCCACAGAATCAGCACGCAGAGAAGGATCAACAGGAGCAAAATCGAAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003213:ENSRNOT00000030300:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.786
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAACCCTTCCGTACTTA
R:
CCTAGGTTGACAGGTGGGTGA
Band lengths:
343-1920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]