GgaINT0127321 @ galGal3
Intron Retention
Gene
ENSGALG00000021439 | HELZ
Description
NA
Coordinates
chr18:7218503-7221273:+
Coord C1 exon
chr18:7218503-7218696
Coord A exon
chr18:7218697-7221062
Coord C2 exon
chr18:7221063-7221273
Length
2366 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGA
5' ss Score
4.07
3' ss Seq
TTTTTTTTTTAATTGTATAGGTA
3' ss Score
9.13
Exon sequences
Seq C1 exon
TTCAGCCCAATCCTTCTGTTCTAATAGGAAATCCTATCCGAGCATATACTCCTCCCCCTCCTCCTCTGGGACCTCACCCCAACCTGGGGAAATCTCCAAGTCCTGTTCAAAGGATAGATCCACACACTGGGACAAGTATTCTATACGTACCTGCTGTCTATGGAGGAAACATGGTCATGTCTGTGCCTTTGCCT
Seq A exon
GTAAGAATTCATTTCCTTTATTTTTTCCCCCACGTCTCCACGCCATTTATTTTATGTACAATAAATCGAGTTATTGAACATCAGTTACTGAATATTTTGCTGCATGTTCCAGCACTTCACCTCAAATGTATGTCCTTAGCTGACTCGCAAGAGTGGCTGTGCAGAGGACCACCCAAAACAGAGGACTTAAAACTGCTGTTCCCACAAATAACTTCAGACAACCTAAAAGCGATTTCATGTTAATGTAATTTGGCTTATTTTTTTCAGCTACTGACATAGACACACCAGTGGGATCTCTCATCTGACTTGAGATACCTGCATGTGAATTAATTGCCTAGTCCAGTTCTTAATCATTGGAGGGATGTGGGCAATTCAGAGCAAGCTCCGTACTGTTTAAATTGCCTGTTTTGGATGTCTGCAGTGCAAGCTGTCTGAAGTGTAGTGATAAGGAAAATAAGCATACTGGGAGGTTTTCCCCTTCCAGAACCTCACAGTGAACTCGTTTCCTCTCCAGTCCCCTTTCCTCGTAGCATTTGGGAGCATAGTGAAGGTCTGTAATCAGGTCTCTTGAGCTATGCTTCCTATGGAATTTTGCATTGCATCTAAAAGTAGTCTACGAAAGCTTGTGCAAAGTAAAGAAGCAGTCTCTGATTTAATTCTAACCTTCACAGTTGCATGTTTTGGGAGGAAAATGGGGAGGAAAGAACAATGGGTGCAGAAAGAATGTTCTTGCATAACACATGCATTATCTGTAGGATGGGTATGGAACCCACACATGCATGTGTTTAGTGCCATTCAGAAATCTAAGTATTTGCATACATTTCACTGTTGACTACTTGAGTCCTCTACTGAAATGTAGGTTATGGTCCCTGTGGAAGGGACTTGCTGTAGGAGCTCTCATTTCAGATGCAAGTTTTGAATCAACTGGCAGATTGATTTTTTTTTTTAATTTTTTTTCCCTTCACTAGGTCAAGTAATTTGCCTTCTTCCTAGCTTACTGGAAACCTACATTTGATGGATAAACTTAAATGCAACAAGAAGGCGAGCAGCTGTATCTTTGTCATGCTTGCTCACATTGTATTAATATCAAACCAAGATAATTTGAATTTTTTTCTTTTATTGTTCCAAGCTTAATCTATTTTCATGTATTTCCAACTAAAAGAAATGTATTAGAAATAAGTATTTTGAGCTCACCTTCCCTGAGGATGGACTTTTAAAATAATTAAGTGGGAAGACTGAGGTACTAATGAGGATAGCTGCTCTTGAAGAGAAAATTATTGGATATGATTTGAGATTGTGCAGATGCAACAGCAGCCCAAAGCTAAAGTTCAAAGTGCATATTTCAAGGGCAAATACAAATTTAAAAAAAAAGAATTGCTTGGAAGTCGTTACACTTGAAAATAACTAAGATCTGAGGTAAAATACTTTTATGTTCGTGTAAGATAAAATGATCTCTTTACTTAATTTGAGGCTGTTTCCGTATCTAATGTAAAAACATGGGGAGTTTGGTTGTGTTCTGTCATCAGTAAAAGGATACTTTGTCAGCCTGAGTGTTGGTAATTACTTTCCTAGCACTCTCTTCTTACTCATATATCTATTTGCCTTCTTTTAATAAATTCCCTACAGGGCAAGATGGAACTAATTTGATCCAGAGCTGCCATCCTTTGCATTCCTTATAGGAATGAAATTTAAAATCTTGTAAAGTTTCCTGACTTTTTTACATACTTTCAGGAAGTGGATTTTACTTCAAATAAGTAGGAAGACAATCTGCAAAGATGTGTCATGTAGAATAGAGTGGCCCTCCGTGCGGATAGTCGATTCTACCAGTAGTCCGGTTAACTTCCCTGAGTGTCTTGTGGGTGTGGAGGTACAGTATGCCCACTCATTCTGTGTTACAAGATTTACAACACTGGGTGATTAAAGGACCATAAGGAGGTCCTCAGGTTAAAGAATTCTCTCTCTGTTCCACCCTAGAAGTACAGCCCAATCTCACTTCAGCTACAAGGTGGAAGAGCTTTGTTTTGCTGAACCCACTGATACTTACAGTGGAAAAAAATGGAATATAATAATTATTAAAATATAATTTGTCCATAAATTTTTTCTGTCTTAATCTTGGCACCACTGAAGCTGGAATGGATTTCAGTACAATAATTTGTATGAAGGATAGTCCTCTAAAACCTTTACTTTTTGCTCCTTGCCACTAGACTGTCATTATTGCTCTTCCTTTCAGCGTTACCTGTAGTTGTGTGTTAGTGTGTCAGGCCACCTGATGTGTGGAAAGCTGCTTTTTACTGATGTCATATACATGTGCTTGTTACATTACTTCCTTTAATGTACCTTAACAAGTTTTTTTTTTAATTGTATAG
Seq C2 exon
GTACCATGGACGGGGTATCAGGGTAGGTTTGCAGTTGACCCTCGAATCATTACTCATCAAGCAGCTATGGCATATAATATGAACCTGTTACAGGCACATGGGCGTGGGTCTCCTATACCTTTTGGCTTGGGACATCATTCACCAGTTAGTATAGGACAGCAACAACAACTTCAGCATCCAGACAAGGAGCAACATGAGCAAAGTCGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021439:ENSGALT00000005876:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=NA C2=0.627
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]