HsaINT0075323 @ hg19
Intron Retention
Gene
ENSG00000198265 | HELZ
Description
helicase with zinc finger [Source:HGNC Symbol;Acc:16878]
Coordinates
chr17:65116521-65119276:-
Coord C1 exon
chr17:65119086-65119276
Coord A exon
chr17:65116729-65119085
Coord C2 exon
chr17:65116521-65116728
Length
2357 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TTTATTTTTTAATAACCTAGGTA
3' ss Score
6.7
Exon sequences
Seq C1 exon
TTCAGCCCAATCCTTCTGTACTTATTGGCAATCCTATTAGAGCATATACTCCTCCACCCCCTCTTGGACCTCACCCAAATTTGGGAAAATCTCCAAGCCCTGTTCAAAGAATAGATCCTCACACTGGGACAAGTATTCTTTATGTACCTGCTGTCTATGGAGGGAATGTAGTTATGTCGGTGCCTTTACCT
Seq A exon
GTAAGTGGACATTCGAAATACTTTCTATTGAATCAAGTAAAATAGGTTTCACTAAAATGGTTCTAATCCCAAATAGCATTCTACCAACTTCTTTTTTAAAAAAAATTTTCAGTGCTGATAATCTTCTTTTAAAGCAAATGTTACCTCTAACCTTGAAATTACGAATTGTTGCTTACAATTTGTTATTAGGTTACTAGTGACTGTGAAGAAATTATAATTCAATTTAGAAACCTTTGTACTATTTTGTTTTGTTTTTTTTTTGAGATAGAGTTTTGCTCTTGTTGCCTAGGCTGGAGTGCAGTGGTGTAATCTTGACTCACTGTGACCTTTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCATGCACCACTACGTCCGGCTAATTTTTTTTTTTTTGAGACGGGGTCTCACTCTGTTGCCCCGGCTGGAGTGCTGTGGCGTGATCTTGGCTCACTGCAAGCTCCGCCTCCCAGGTTCACGCCATTCTCTTGACTCAGCCTCCCTAGTAGCTGGGACTGCAGGTGCCTGCCACCACGCCTGGCTAATTTTTTTGTATTTTTAGTAGACGCGGGGTTTCACCATGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCGCCTGTCTTGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCACCTGGCCATGCCCGGCTAATTTTTTGTATTGGTAGAGACAGGGTTTCCCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCCACCCGACTTGGCCTCCCAAAGCACTGGGATTACAGGCATGAGCCACTGTGCCTGGCCACCTTTGTAATCTTTTAAAATATTTAATTGTAATCTTAATTTGTAATTTGTAATCTTTAAAATTTAATTTGTAAATCTAAATATTTAATTTGTAATCTTTTAAAATATTTTATTGAGGAAAATTGAGCTAAAAGTTAACGGAGCTAATGAATTGGTCTCATTTTGTAAAGTGATGTTTTCATTTTATCTTTTTATTTTTGTATAAGTCAAAAACTGTTCCCAAGAAATACAGGACACAGGCTTGGATTAGTCTAGTTCACTTGGATCTAAATTGATTTGAGAAATTCCACATCTTGTGAAATCTTAACTACTACTTAAAAACATTACTCTATCCTTTGTAAGACTATAGATTTTTAGAGGCCGTCCGTCTTGTATATAAACCCATTTTCTCTTTCTTTAGAATTTTTGAATATTTTGTTAATTTGCTGACACGAGTATTTTCAATTCAGGAGTTTTAGCCTTGGAAACAATTTCTTTCATTTAAGGCAAGCACTGTAATTTCAGGCTGAGATGATCATTGCCAAAGGTTTTTGGCAACCTTGCCCACACTCCAGAATGGGAAAATGCTTAGCTGCAAACATTTCTCAGCCACGTTGGTCAGGATAGTTCACAATCATGACAGCCAAGGAGAATGACTGTAAATGAGAAATACGTAATTCATGCCCACTCCCCATAGACTTCAGACTTTGGATTTTAGCAGTTATTTCTTCCAGACAGCTTGGCAACACTATACATCATCTGCTTTAAATAGTAAGTCCCTTAGGATTTTTATTTCACTTTACTAGGTCAAAGAGACTTCTATTTTGTAAGATTTCTGAGAGTTTGCATTTAACAGTTATAATAAAATAATAGGAGCAGTAGCTCAGATGTCATTGTATTTATTCCTTTTGTGTTAATATGCAGAGATTATATATCTAGACACACTTAAACAAGTTTTCTGTTTTTGTATTTTAAGGTGGAGTTGAATTAAAAGCACAGATGACCTATTTGAATTTTACCTATAATAAATGAACATTAAATGATGTGGTTACTCATATTAAGTTGGAATACCAGTTTTTTGAGTTGAGACTCCTTAGGCTAAGTTCTTCCTTAACTTTTCCCCCTGTCTATTAAACTATGTTTCTATGCAATTATGACTTTAAAAGATTATTTTTATGGTAATCTGACATGTATACATTCATATGGAGGGGAAACAAGTAAATACTATAAAATGATTTAATGCCTCAAGGAATAATTACCAATTTTAAGCCCTCAGTTTCTTCCTAATCTGAAAAATGATCTATTTTCCATTACATACTAAAGGTGCAGGGAGCTGTTTTTTAGCCAGTTAAGACACAATTGTTAGTATTAGCATCAACTTTGTAGTTATTTATTTTGAGAAAATTAACATCTGTGTGTGTGTGTGTTTGTATGTCTTTGTATGTTTGCTTTTCCCTAATCAGCAGCACTCTAGCAGTTTGCCTTCCAAAATATACTTAATGCATGTATTTTATTTTTTAATAACCTAG
Seq C2 exon
GTACCATGGACAGGATACCAGGGTAGGTTTGCAGTTGATCCTCGAATTATTACACATCAGGCAGCAATGGCCTATAACATGAACCTATTACAGACACATGGACGAGGATCTCCTATTCCTTATGGCCTTGGACATCACCCACCTGTCACCATAGGCCAGCCACAAAATCAGCATCAGGAGAAGGATCAACATGAGCAAAATCGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198265-HELZ:NM_014877:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.531 A=NA C2=0.814
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)