BtaINT0072314 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013108 | HK2
Description
hexokinase 2 [Source:HGNC Symbol;Acc:HGNC:4923]
Coordinates
chr11:9723269-9725837:-
Coord C1 exon
chr11:9725604-9725837
Coord A exon
chr11:9723629-9725603
Coord C2 exon
chr11:9723269-9723628
Length
1975 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTTCCTCCCAACTTTTTCAGCTT
3' ss Score
9.6
Exon sequences
Seq C1 exon
TGACTGCCTGGCCCTGCTGCAGGTCCGTGCCATCCTCCACCACTTAGGGCTCGAGAGCACGTGTGATGACAGCATCATCGTCAAGGAGGTGTGCACCGTGGTGGCTCGACGGGCAGCCCAGCTCTGTGGTGCAGGCATGGCCGCTGTAGTGGACAAAATACGAGAAAACCGTGGGCTGGACACCCTCAAAGTGACCGTGGGTGTGGACGGGACCCTCTACAAGCTACATCCTCA
Seq A exon
GTGAGTGCCCAATCGCCACTCTTCCTGCCCACCTTTCTCCCCACATCTCTTCATTCTTTGCCTGCTTTCCTTTCTCTTTATTTTATGGCAAATTTTCAGACATTCCAAAGAGTATATATAGTGCATATATTATAGTTTAAAGATTAATAACTAGAAGTAGGTCTGTGTTTTACCATCCAGCTTGGAAGCCCCCTGGGAGCTCCTCCCAGTTGCACCCTTCATTTTCCCCACCATAAGTGCTGAGGTGATTAAGTTTGTCACTTTTTTCCTCCCATATTTTATATATGCATCTATAGTGTTTATTTTTACTTAATTTTTTTTGGCTGCACTGAGCAGCATATGGGATCTTAGTTCCTGGACCAGGGATCGAACCTGAGCCCCCTGCATTGGAAGCACAGTCTTAGCCACAGGACCACCAGGGAAGTCCCAGCTTTACTTAATGTTGAATTTACCATAAGGGGAATCCCATGGCATCTTTTCTTTTGTGACTGGTTTTTCTCACACTGCATGTATGGTTTTTAGATGCCTCAACACTGAAGTCTGCAATCATAGTTCATTAATTTTCAGGGCTGTAACCTTTGAGTGACTAAGCTATAATTTATCCTAATGATGAGTATTTGAGTTATTTCTAGATTTTGACTATTTCAAACAGTGCTTCTGCCAATGTTCTCGTATGCGGGAAATCTGGAGCATTTTTTCCCATCGTCTAGGGTAGGAGTTGGCAGCTTATAGCCACAACTTTTTGTAAATAAACTTTTATTGAAACACAGCCATGCCCACTTGTTTATGTGTTGTTTATGGCTGCTTTTGGCTATTAACAGCAGACTATATGACCACAAAGCTCAAAGTATCAATTGTCTAGCCCTCTATAGAAGCAGTTTGCCACCCTCATCAAATTCAGTATGGAAATACTGAAGTCCTTTTTCTTTTTACTCTTTCTTCTGTCTTTGTCCATCTCTTCCCCTTTTGTCCTCTCATCACTATTTCTCTTCTCCTTTCTTCTCTCACTTGCATATATTTTGAATAAATTGTTTTAAAATCAGGATATACCTCAGTTCCTTTCCCGTAGAAGCTCTTCAACTAAAACTTAAAAGAACAGAGCTGTGCCCCTTGCTCAGCGGAAGGTAGGATGGAGAGACTCATTGATTGACTTGTCATCTGTGTCACCATGATTGTTTCAAGAAGTTGAGAAGCTTGCCTAGAGTCTACAGTTCGTGCAAAGAGTGGACCCTGAGAAGCTCTAAATTTCTCTTATTGATGTTCAGTGTCATTGTGAAAACAGGAACCTCAGTCTCAAGTGAGGGTTGGAAGTGGGACAGAAGTCCAGCCACTAGCACTGGGGCTTGATGTTAGGACCTCCATTCTCAGCTGCCAGTGGGGAGGAGCAACCTGACCCTGCTCTAGTGGGTCGATAATGACAAAGGGTCTCTTCCTCTAGTCCCATGTCAGGAAGAATCTTTGATTCTTGTCATCTCCCAACAACACACTCCTAAGTCTGCTCCTTTTGCCTTTAATGAAATTTTGGGTGAGACATGACTCTGATATGAGTTAATATCTCTGGAAAGTGTAATATCACATGTATGGGACTTGGTCCTCCCCTCTAGAGCTGATGAACAGGCACTTCTGCAAGCCATGCATAAATGACTGCTCTTTTAAGAACACAGCTGGCCATAATCTCAGGCTTTTGTCCTAGAGTTGAATCTTAGCTTCTCACTTAGCTTCTCTTGCCCACTGTGACATAGAACTTGGGCATGTTGCTAGTCTCTCCAAACCTCAGTTTTCTGAAACACAATACAAAGTGTTTAATACTATGGTATTTAATACTATGGTATTAAACTAGGATGGTAGCTATCATCCTCTTCTCCATCTCAATTATTCCTAGGTTTCCAGCATCACTTCTTAGGGCACTATCTTTCAGGACACAAATCTATCGTGACTAAGATATTTTATTCTGTCTTCCTCCCAACTTTTTCAG
Seq C2 exon
CTTTGCCAAAGTCATGCATGAGACGGTGAAGGACTTGGCTCCAAAATGTGATGTATCCTTCCTGGAGTCAGAAGATGGCAGTGGGAAGGGGGCAGCTCTCATCACTGCTGTGGCCTGCCGCATCCGAGAGGCTGGACAACGGTAGAGCCCCTGCAACTGGAAGGACTTTCTCTGGTTTTCCTTCTTTCCTGCTTTAAATTATAAGATGCCATTCCCCTTGTGTCAGAAACAGACCCCTAGGCTTTTCCTTGGCAGAGAGGACCTCATTGGACTAGGTTTTGTCTCTGTCTACTCAATGTAGAGTTTGGTTCCCAAGCCTTGGCTCTCCTGAGATAAATACAATTTGTTCACACTTTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013108:ENSBTAT00000060994:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCCACCACTTAGGGCTC
R:
TCTACCGTTGTCCAGCCTCTC
Band lengths:
349-2324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development