GgaINT0004623 @ galGal3
Intron Retention
Gene
ENSGALG00000009754 | HK2
Description
NA
Coordinates
chrUn_random:10841543-10842859:+
Coord C1 exon
chrUn_random:10841543-10841776
Coord A exon
chrUn_random:10841777-10842532
Coord C2 exon
chrUn_random:10842533-10842859
Length
756 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TCCTCCTCCTCCTCCCACAGCTT
3' ss Score
10.85
Exon sequences
Seq C1 exon
CGACTGCCTGGCCCTGCTGCAGGTGCGCTCCATCCTCCAGCACCTGGGCTTGGAGAGCACGTGTGATGACAGCATCATCGTCAAGGAGGTGTGCACCGTGGTGGCCCGGCGTGCCGCGCAGCTCTGCGGGGCCGGAATGGCCGCCGTGGTGGATAAGATCCGCGAGAACCGTGGGCTGGACTTCCTCAAGGTGACGGTCGGTGTGGATGGGACGCTCTACAAACTGCACCCACA
Seq A exon
GTGAGTGCCTGGCAGGGGGGCGTGGGGAGGTGGTCTGTGGATTGATGGGGGGCTCAGATGGGGGTTCTGCCCACCAGGAGGGTCTGTGGTGAAGCTCTGTCCCTTCCAGTGAAGCCCACACAGAGGCCACGGGTGCAGGGATGAGCGTGCACTGGGCTCAGGGCTCCATGGTGGGGCATACAAAAGGCTCAGGGCTCCGTGGTGGGGCATACAAAAGGCTCAGGGCTCCGTGGTGGGGCATACAAAAGGCACAGGGCTCCATGGTGGGGCATACAAAAGGCACAGGGCTCCATGGTGGGGCATACAAAAGGCACAGGGCTCCATGGTGAAGCATGCATAGGGCTCAGGGCTCTGTAGTGGAGTGTGCATTGGACTCAGGGCTCTGTGGCGGATCATACAAAGGACTCATGGCTCCATAGCATAGTGTGCGTTGGACTCAGGGCTCTGTAGTGGAGCACACAAAGGTCTCAGGGCTCCATGGTGAAGCATGCACAGGGCTCAGGGCTCCACAGTGGCTCATGCATCGGGCTCAGGGCTCCGTGGTGGGGCTGCACAGAGTCCCACGGCGCTCAGGTTGGGTGCTGGCCGTGAATCGGGGCTGGAAGGCAGAACATGGGCTGTCTGTGCCCGGCTCCCAGCACTCCCACATTGTGCATTGGCATGGGATGGCGTTGGCGTGGGATGGCGTTGGCTGCATCACAGGACGGCTCTGATGGGTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCACAG
Seq C2 exon
CTTCTCGGCCATCATGCAGGACACGGTGAGGCAGCTGTCCCCGTGCTGCGAGGTGACGTTCCTGCAGTCGGAGGACGGCAGCGGTAAAGGCGCGGCGCTCATCACGGCCGTGGCGTGCCGGATCCGCGAGGCTGGGCAGCGGTAGGAGCAGCACGGAGCTCAGCTAAGCGCCCGACGGACGATTCCTTCCCCGCTCCCTCCCTCTGTACACACACACACACACACGGGGCCCTCCCCCCTTCGCTCTCCTCGTGGGACACAAAGGCTGCGTCCCACCCAACCCTGAACCACTCACGCGTCCCCCGACGGCAGAAAGGATCCGCGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009754:ENSGALT00000036098:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.8=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.8=85.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACTTCCTCAAGGTGAC
R:
TGAGTGGTTCAGGGTTGGGT
Band lengths:
354-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]