RnoINT0070968 @ rn6
Intron Retention
Gene
ENSRNOG00000006116 | Hk2
Description
hexokinase 2 [Source:RGD Symbol;Acc:2797]
Coordinates
chr4:113559427-113563389:-
Coord C1 exon
chr4:113563156-113563389
Coord A exon
chr4:113561708-113563155
Coord C2 exon
chr4:113559427-113561707
Length
1448 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CCCCTTTTCTCCTTCTCCAGCTT
3' ss Score
9.96
Exon sequences
Seq C1 exon
CGACTGCCTAGCCCTGCTACAGGTTCGTGCCATCCTGCGCCACCTAGGGCTGGAGAGCACGTGCGATGACAGCATCATCGTGAAGGAGGTGTGCACTGTGGTTGCCCGGCGCGCTGCACAGCTCTGTGGCGCAGGCATGGCCGCCGTAGTGGACAAGATAAGAGAGAACCGTGGGCTGGACAACCTCAAAGTGACAGTGGGCGTGGACGGGACTCTGTATAAGCTTCATCCTCA
Seq A exon
GTGAGTGCCTGACCTCGGGGGTGAAGAGGGCTGCCCTGTCTTCCTTCTCTTCGTGCATTTCTCTTCTCCACCTCCTCTCAGCCGCTCCAAAGAGGGTTTCGTGCTTAGTTTGCAGATTAATGGTGGTGACCCTTTTGTTGGTCTGAGAGCCTGCATGTGGGTGTAGCTGGCTAAATTCCAAGGCTGGTTCGCAACTTTTTTTGATTTTGAGCCAGGGTAGCCTTGAATTCATTATGTAGTTGAGGCTAGCCTCTAATTCCTCCTAGCCCTCTGTCTCTTGGGGTGGAACGACGGGAGTTCACTACTACCAGAGATTGTATTTCCCAGTGATCACTGCTATTTCTGTATTGACGTGATGTCTAATCATTTTGATTGAGATTTTGGCTGTTAGGATGCACTGGGAATAATCTGGTAGACTTTGTGATTCAAGCAAGATTTTTTTCTGTGATTGAAGGATTGTCCACTCAGTGCTTGTGTTACTAAAGGCTTTGTAAGAGCACAGCCACTCCCATCCCCTGTCTATGTGCTGACAGAGTACATATTTTTTGCTGAGATGGCAGAGTAGCCATGAGAGGGCACACGGCCCACTGCACTGGAACATGTATGAGTGTCTCTGTGGGGTATTACATTAGAGCAAGGGTACCCTTGCAGGCCGATTGCCTGGCACCGGAGTTACAGGCAATCATGAGCAGCCTGACCTGGTCAAGCGATCAAACTTGGCTCCTGAAAGACCAATAGATGCTCTTAATCACAGAGCCATTGCTCTAGCCCTTAATTTACCTTTAAAAGTTAGTTTAATTTATATATGGGCTAGAGGTGGGAGGCATGGGGAAGGTATGTACATGGGTGCAGTGCCTACGGGGTCCAGAAGATGGCTCTGGATTCCTTGAAGCTGGAGTTACAGGGCATTGTGAACACCATTTGGGTGCTGGGAACTGAATCTTGGTCCCCATGCAAGGGTTCTCGTACTCAGTGCTGATCTATCTCTCTCACCCCTTGCTTTGTCTTTAAGCTAGAGTCTCTTTAAATCCCATGCTGGCCTTTGAGACATAGCCTATCTTTGCTGTGTAGCCAAGGGTAACCATGGGCTTTTGACTCCCTTCTTGTTTGCTGGGATTACAGACATGGGCTACGGTGCTCAGTCGATGCTGGGGGTGGAACCCTTATGTTGCTAGGCAAATACTATCAACTGAGATACAGGATCAACTGATATGTTTTGAAGAAGTTTATCTGCATCTCAAGACATTTGTGCCAAAAACTTGAGCCTTCTACTCTTGTGGTTGGCCACTGTGGTCTAAGACTTGACGTGGCCCTAGCCCCTGCAAGCCTGTCTACGGTACCGAGTACAAAGTAAATGTTAGTTTGTAGGTGCCTTGCCTCACTTCTCATTCCTCTTTCCAGCTTCCCTTGACACCAATCAGTCACATCCCCCTTTTCTCCTTCTCCAG
Seq C2 exon
CTTTGCCAAGGTCATGCATGAGACGGTGAGAGATCTGGCTCCGAAATGTGACGTGTCCTTCCTGGAATCCGAGGACGGCAGTGGGAAGGGAGCAGCTCTCATCACTGCCGTGGCCTGCCGCATCCGGGAGGCTGGGCAGAGATAGAAGCTTGGGGACCAGACGGGGCTTCTCTGCTTCCTCACTTCCCCGTTTTAAATTATGAGAAGATGGACCCCTTGGCAGAGAGGACCCTGTGAGACTGGGACTTTTGTCTCTGTATATTCACTGTAGAGTTTGGTACCCAATCCTTGGCCTTCCTGAGAATCTGAAGTAAGGAGTTGTTCGCAGTTCCTGCTGGTCACCTCCTGGGATGGTCCTCCCCCACTCTACTTCCTGTACAATCCTATGGGATGGGGACAGTCTTGAGAAAATGGTTGCCTCAGCTTGGAGCTGAACCTGACATTTGTAGGTGGAGAACATCTTGAAATGTCGATGCTTCTCTCATCAGAGGTAGATGTTGGGTGGGAGGGAGGAGGAGAGATAGGACGTCCCCTGCCCTACGTGGCTGTCCCTCTTCAACTCAACCCATAAGCATCACCCTGCCGGTTCTAAAACATTTGCTGTCCTGGGATAGAGGAATCTGAACCAAAGCTAGAGTGGACGTCTTCTTCAAGTGTTTGTGGCTTTACCTCACATGGCTGAATGTGTCATCCACGAGCTACAGACCTTGGGGACAGGAGTGGCTTTGGTCGCTTTTTAGTTTTTTGTTTTGTTTTGTTTTTTTCTTTTTTAATTTATGTTTGAAATTTACTTAGTTTAAAGCAGGTCCTCTCCATTGTGTAATGGTTAATTTTGTAAGTAATGTATTTATGTGTTCCTTTGTTCTGTATATAGCTGGCCAGGGTCTCCTGACTCGGCCTCATGAGTAGATCATTGTAGTTCTGGATATGAGACACTGACTGGCTCTAGAAATACCTCATTCACCCGTGGGAAGAGGAGATAGGTAGAACCTCTTAGTGGGTTATTGGCAGAGCGCCAACCTCCTGGCTTCACCTTCCTCCGGGGTCTGTGAGGTGTATGCAAGGCAGGAAGGGAGACTGAGGCTGGTCCCCTGGGGGAAGGGAGCCATAGATAGCAGCTGGCTGCTCCGTCCAGGTGCTTTCCTGACTGGTCTCACCCAGGATGTTAGCCAAAGAAAACCAAAGGGTTTGTTCTCACTGTGTAGAGGGCTCAGTTTGTAGGTCAGTCAGTGTTTTAAGACGGTTTGACAAATAAAAGGAAGCCACCAAACACTGTTTTTAAAGTCATCTGATTGTTGGAGCAGACCATACAAAGCATTGAGAGAATTCAACCAAGCCTCAGGGATGTCTCGGGGGTGTTGGTGCATTTGCCCTCCTAGCAGATCCCACCTCCGGTTTGTCTTGTGTTTTACACGAGACGTTCGATGTCTGTCTGCTTCCTCAGACTGAGCCACACCGAGCTGCCGACTCTCCTTTTTATACATGTTATTTATTCCGGACTGTTCGAGGAACGGGAGGACGTCAATGCCCTGTTCTCTGCTCTCTGAGTACGGTTCGCTCTGAATCCGAAAGTTCACCTCTCCCTTCAAAATATTAAATTGACCACCAACATTAAACCTGGATAGGATGTAATAAAGAAGGAATAGCCTTGCAACACTAAAACAGAGATAACATAAAGACCAAAAGAAAACTCAACCTTGTAGCCCCTAAGTTTTGAACATCTTTCAAATGTGTGCTGAGCAGAGCCTGGTTACATCCGAACAAGCTCCCTGGGATGCCCAGAGGGAAGGTCGAATGTTGATTTGTTCCAGGCTGGCACTGCCTATCTGGTGTAGCTCCCTCAACCTGCAGTAACCGAAACAGACCTGAAAACCAAAGCCATCTATAGATGTGTACACCACTAGAGGGTAGCCACGGAGTGCAGATGGATTCTGACTAAAGTTTTCAATCTTGAATTTAAAACTTTTAAAATCAAGCACCACCTAGGAAGGGACACTTTTTTTTCTTTTTTTAAAGGTGAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGCTTTTTAAGGAAGTTGGCTTTCAATCCAGAGCATGAGACAGTGTGCTGTGTTCCTAGCACTAGGTTGACAGCCCTCTGCTAAGCTACTTTGTGGTATTCAATGACCTTTGACTCATCTCAAATCCCTGGGCACTCGGTTTTGTCACTATGTACAGTAGAGAACTAGTTGAAATTAACCATGTGATGTTAACTATTATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006116:ENSRNOT00000008813:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGGAGGTGTGCACTGTG
R:
GGGGAAGTGAGGAAGCAGAGA
Band lengths:
344-1792
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]