MmuINT0077990 @ mm9
Intron Retention
Gene
ENSMUSG00000000628 | Hk2
Description
hexokinase 2 [Source:MGI Symbol;Acc:MGI:1315197]
Coordinates
chr6:82675021-82678939:-
Coord C1 exon
chr6:82678706-82678939
Coord A exon
chr6:82677449-82678705
Coord C2 exon
chr6:82675021-82677448
Length
1257 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CCCTTTTTCTATCTTTCCAGCTT
3' ss Score
10.91
Exon sequences
Seq C1 exon
TGACTGCCTGGCCCTGCTACAGGTCCGAGCCATCTTGCGCCACCTAGGGCTGGAGAGCACGTGTGACGACAGCATCATTGTGAAGGAGGTGTGCACTGTGGTCGCCCGGCGCGCGGCCCAGCTCTGTGGCGCAGGCATGGCCGCCGTGGTGGACAAGATAAGAGAGAACCGTGGACTGGACAACCTCAAAGTGACGGTGGGCGTGGACGGGACACTGTACAAGCTTCATCCTCA
Seq A exon
GTGAGTGCCTGACCTTGGGGCTGTCCTGTCTTCCTTCTTCTCCTTGTATATTTCTCTTCTCGCCCTTCTCTCAGCCACTCCAAAGAGGGTTTAGTGCTTAGTTTCTAGATTAGTGGTGATGACCCTTTTGCTGGCTTGAGAGTTTCTGTGCAGGTGTAGTTAGCTAATTTCAAGGCTGGATCACAACTCTTTTGGTTTTGAGCCAAGATAGCCTTGAATTCATTATGTAGCTGATTCCAAATCATCTGTCTCTTGGGGTGGGACCACGGGAGTTCACTACTACCAGAGATCGTATTTCTCAGTGATCGTATCACTGATGTTTCTGTAATGATGTGATGCCTAGTCGTTTTGATATGTTTTCGTCTCTGTGGTGGGTATTACACAAGAGTGATGGTACCCTTGCAGCCTGATTGCCTGGCACTGGTCAGTTGTGAGCAGCCTGACCTGTTACTGGCGATCAAACTTGGCTCCTGAAAGAACAATAGATGCTCTTAACCGCAGAGCCATCTCTCTAGCCCAAAGTTTCCCTTTAAAGGTTACTTGAATTATTTGGTAGAGGTGTGGGGGGGTAGGGAAGTCGTGGACACGGGTACAGTGCCTACGGAGGGCAGAAGATGGCATTGGGTTTTCTGGAGCTGGAGTTGCAGGGTATTGTGAACATTGTTTGTGTGAACACCATGTAGGGGCTGGCAACTGAATCTTGGTCCCCTGCAAGGAAGGGGTTTTGTACTTCTCGGTGTTGAGCCGGTGTTGAGCCATCTATCCCACCCCTTGCTTTGTTTTTTAAACTAGAGTCTCTTGTATCCCACACTGGCCTTTAACAACATAGCACATCCTTGCTATGTAGCCAAGGGTAACCTTGAGCTTTTGATTCCCCTGCTTCTTGTTTGCTGGGATTACAGACATGGGTGGGCTACGGTGCTCGGTAGATGCTGGGGCGGGAGGGCAGGGCGGGGGGTGAACCCAAGGTCCTCACTTATGCTGCTAGGCAAGTATTATCAACTGAGGTACATCCCCAGACCAACTGATTTGTTTTGAAGAAAATTCACCAGCATCTCAAGACATTTGTGCCAAAACTTGAGGTTTCTACTCTTGCGATTGGCCACTGTGGTGTGGTATAAGGCTTGGGTGTGGTCCTAGCCCCTGCAAGCCTGTCTGTTTGTTAGTTTGTAGGTGCCGTGCTCCACGTCTCATTCCTCATTCCAAGCTTTGCTTGAGGACACCAGCCACTCACATCCCCTTTTTCTATCTTTCCAG
Seq C2 exon
CTTTGCCAAAGTCATGCATGAGACGGTGAGAGATCTGGCTCCGAAATGTGACGTGTCCTTCCTGGAATCCGAGGACGGCAGTGGGAAGGGAGCGGCTCTCATCACTGCTGTGGCCTGTCGCATCCGGGAGGCCGGGCAGAGATAGAACCTTGGAGCAGACGGGACTTCCCTGCTTCCTCACTTCCCTGTTTTAAATTATGAGGAGATGGACCTCTTGGCATTTCCTTGGCAGAGAGGACCCCGAGAGACTGGGACTTTTGTCCCGATATTCACTGTAGAGTTTGATACCCAATCCTTGGCCTTCCTGAGAATCAGAAGTAAGGAATTGTTCACAAGTTGTTCCTGCTGGTCACTTCCTGGCATGTTCCCTCCCCTGTTCTACTTCCTGTACAGTCCTATGGGATGGGGACAGTCTTGCGAATATGGTTGCCTCATCTTGGAGCTGAATGCGACATTTATAGGTGGAGAACATCTTGAAATGTTGATACTTCTGTCATCAGATCAGGCATTGGGAGGGAGGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGCAGTATGGAACGTCCCCTGGCCTACATGGCTGTCCCTCTTCAGCTCAACCTGTAGGCATCACCCTGCTGGTTCTAAACATTTGCTGTCCTGGAATAGAGGAACCCAAACCAAAGCTAGACTCGACACCCCCTTCAAGTGTCTGTGGCTTTACCTCACACGGCTGAACGGGTCATCTATGAGCAGCAGACCTTGGGGCTAGGGGTGGCTTTGGTAGCTTTTCAATTTCTTTTTTTTTTTTTTTTTTAATTTATGTTTGAAATTTATTTAGTTTGAAGCAGGTCCTCTCCTTCATTGTGTAATGGTTAATTATGTAAGTAATGTATTTATATGTTCCTTTGTTCTGTATATAGCTGGCCAGGGTCTCCTCTGACTCGGCCTTGTGAGTAGATAGATCATTGTAGTTCAGGATATGAGGTGGAGACACTGACTGGCTCTAGAAATACCTCATTCACCCGCGGGAAGAAGAGAGACTCGGAATCTCTTGGTGAGTGATGGGCAGAGCGCCACCAGCCTCCGGGCTTCACCTTCCTCTGCTCCGTGAGGTGTATGCGAGGCAGGGATGGAGACAGGGTGGTTCGCTGAGGGAAAGAAGCCACAACACCTGGCTGCTCCGTCCAGAAGCTTTCCTGAGTGAGGTCTCACCCGGGATGTTAGGCAAAGAAAACCAAAGGATTTGTTTCAAGTTCTCACTGCATAGAAGATGTGATTTTTAGGTCAGTCGGCGTTTCAGAATGGTTTGACAAGTTACAGGAAGCCAGCGAAAATGTTTTTAAAGTCACATCAGATCGTTGGAGCAGACCACATGAAGCATCGAGAGAACTCGACCAAACCTCAGGGGCGTCTCGGGGTGTTTGTACATTTATTTGCCCTCCTAGCAGATCCCACCTCCGGTGTGTCTCGTGTTTTACACGAGATGCACGCTGTCTGTCTGCTTCCTTGGACTGAGCTGCATCGAGCTGCCGACTAGCCTTTTTATACGAGTTATTTATTCCAGACTGTTTGAAGAACGGGAAGACACCAATGTCCTGTTCTCTGCTCTACCAACACGGTTCGCTCTGAATTCAAAAGTTCACTTCTCCCTTCAAAATATTAAATTGACCACCAATGTTAAACCTGGATAGGTTTAATAAAGAGGAAACAGCCTTGTAACACTAATAAACAAGATACGGGGGTCAAAAGAGAAAGACCAAGAGAAAGCTCAGCATCGTGGCAGCCATGTTTTGAACATCTTTCAGACTTGTGCTGAGCAGAGCCTAGTTACAACCGAACAAGCTGGTGTACAGTGAAATGAAGGCTGCCCAGGTCCTCCCGGGATGCCCAGAGGGAAGGTCGAGTGATTCCTGCCTGATACTGCCTGTCTGGTGTAGCTCCCTCAACCTGCAGTTACCGAAGCAGACCACTGAAAGCCGAAGCCACCTATAGATGTGTGCAGCACTAGGGGGTAGCCACCTATAGATGTGTGCAGCACTAGAGGGTAGCCACGGAGTACAAATGGATTCTGACTAAATTTTCGAATCTTGAATTTTAAACTTTAAAATCAAGCACCATCTAGGAAAGGACTTTTTTTTAAAAAGGGGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTCTAACTTTTAAGGAAGTTGGCTTTCAATCCAGAGCATGAGACAGTGTGCTGTGTTCCTAGTACTAGGCTGGCTACTGCCAGCACTAGGTTGACAGCTCTCTCTGCTAATGCTGCTTTGTGTGATCTTCAGTGAACCTTTGACTCATCTCATATCCCTGGGCACTCGGTCTAGTGAGCGTTTTGTCATCATGTACAGTAGAGAACTAGTTGAATTAACCATGTGATGTTAACTATTATTAATAAATTTTAACTTTTTTTTTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000628-Hk2:NM_013820:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(32.5=100)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(16.7=81.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTGACGACAGCATCATT
R:
AGTGAGGAAGCAGGGAAGTCC
Band lengths:
358-1615
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: