BtaINT0072330 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014898 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr7:39694011-39694470:-
Coord C1 exon
chr7:39694287-39694470
Coord A exon
chr7:39694167-39694286
Coord C2 exon
chr7:39694011-39694166
Length
120 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
ACACACACATGTTCATGCAGGTT
3' ss Score
6.42
Exon sequences
Seq C1 exon
GAACAGGAACCAATGTCTGCTACATGGAGGAGCTCCGGAATGTGGCAAGTGTGGATGGGGACTCAGGCCAGATGTGCATCAACACGGAGTGGGGCGCCTTTGGGGATGACGGCTCTCTCAGCATGCTCAGCACCCGTTTTGATGCCAGTGTGGACCAGGCATCCATCAATCCCGGCAAGCAGAG
Seq A exon
GTATGGGTTGGGCCAGGCAGGTGTGACTGGTGGTGGCCGGCACTGGTTGATATGGCTGGTGGCTGGTGGTGGCTGGGGCTGGGGCCTTAGCCCTGTGGGCACACACACATGTTCATGCAG
Seq C2 exon
GTTTGAGAAGATGATCAGTGGCATGTACCTGGGAGAGATCGTCCGCCACATCCTCTTGCATCTGACTAGCCTTGGAGTTCTCTTCCGGGGCCAGCAGACCCAGCGCCTTCAGACCAGGGACATCTTCAAGACCAAGTTTCTCTCTGAGATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014898:ENSBTAT00000019834:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCCAGATGTGCATCAAC
R:
AGATGTCCCTGGTCTGAAGGC
Band lengths:
247-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]