RnoINT0070984 @ rn6
Intron Retention
Gene
ENSRNOG00000026235 | Hk3
Description
hexokinase 3 [Source:RGD Symbol;Acc:2798]
Coordinates
chr17:10151737-10152172:+
Coord C1 exon
chr17:10151737-10151920
Coord A exon
chr17:10151921-10152016
Coord C2 exon
chr17:10152017-10152172
Length
96 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGG
5' ss Score
8.98
3' ss Seq
ACACACCTGCCTTCAAACAGGTT
3' ss Score
8.6
Exon sequences
Seq C1 exon
GAACCGGTACCAACGCCTGCTATATGGAAGAACTCCGGAATGTGGCGAGTGTGCCCGGGGACTCGGGCCACATGTGTATCAACATGGAGTGGGGTGCCTTTGGGGATGACGGCTCACTGAGCATGCTCGGCACCTGCTTTGATGCTAGCGTGGACCAGGCATCCATCAACCCAGGCAAACAGAG
Seq A exon
GTATGGTTTAGGCCCAGGCCGTGGTGGACTGGGCTGGGGAGAAAGGCTAATGGGGTCCTCTGTTGCATGGGCCTGCACACACCTGCCTTCAAACAG
Seq C2 exon
GTTTGAGAAAATGATCAGCGGAATGTACCTGGGGGAGATCGTCCGCCATATCCTCCTGCACTTAACCAGTCTTGGAGTTCTCTTCCGGGGCCAGAAGACGCAATGCCTTCAGACCAGGGACATCTTTAAGACCAAGTTTCTCTCCGAGATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026235:ENSRNOT00000031935:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTTGATGCTAGCGTGGA
R:
GTCCCTGGTCTGAAGGCATTG
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]