GgaINT1014859 @ galGal4
Intron Retention
Gene
ENSGALG00000027287 | HK3
Description
hexokinase 3 (white cell) [Source:HGNC Symbol;Acc:HGNC:4925]
Coordinates
chr13:9651877-9652294:+
Coord C1 exon
chr13:9651877-9652060
Coord A exon
chr13:9652061-9652138
Coord C2 exon
chr13:9652139-9652294
Length
78 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
3' ss Seq
CGGGGCTGTGCCCTGGGCAGGTT
3' ss Score
7.45
Exon sequences
Seq C1 exon
GGACGGGGACCAACGCCTGCTACATGGAGGAGAGGGCAAACGTGGGCACCGTGGAGGGAGACGAGGGCCGCATGTGCATCAACATGGAGTGGGGTGCTTTTGGGGACAACGGCTGCCTGGACGGCTTCTTCACCAGCTTTGACCAGCTGGTGGATGAGAAAACCATCAACGCGGGCAAGCAGAG
Seq A exon
GTGGGTGACGGCTGTGGGGTGGGCAGGGTGCTATGGGGTGCTGGGGGCAGCGAGGCAGCGGGGCTGTGCCCTGGGCAG
Seq C2 exon
GTTTGAGAAGCTCATCAGCGGCATGTACCTGGGTGAGATCGTGCGGCACATCCTGCTGGCTCTGGTGGAGGAGCAGGTCCTGTTCCGCGGCAAGCCGTCCCACAACCTGCAGAACAGGGACATCTTCCAGACCAAGTTCCTTTCCAAAATTGAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027287:ENSGALT00000045865:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(24.6=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTTCTTCACCAGCTTTGA
R:
CTGTTCTGCAGGTTGTGGGAC
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]