BtaINT0072904 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005726 | HNRNPA2B1
Description
Bos taurus heterogeneous nuclear ribonucleoprotein A2/B1 (HNRNPA2B1), mRNA. [Source:RefSeq mRNA;Acc:NM_001045975]
Coordinates
chr4:70203887-70204687:+
Coord C1 exon
chr4:70203887-70204009
Coord A exon
chr4:70204010-70204604
Coord C2 exon
chr4:70204605-70204687
Length
595 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TCTTATTCCATTAACTTTAGGAA
3' ss Score
8.77
Exon sequences
Seq C1 exon
GAAATTACGGGAGTGGAAATTACAATGATTTTGGAAATTATAACCAACAACCTTCTAACTATGGTCCAATGAAGAGTGGAAATTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAG
Seq A exon
GTAATTAGATTTTTCAGATTAGTGATGAAATGTTACTAACTTTCATGACTTGAAGATGACAATTGTTCATTATTTATGTTTGGGTAACGCGTCCCACCAAATACAAAGTGTTGCGGAGATTAAAGTTGTGGGAAAATAAGAATGCAACATCACTTTGGGAAATTGTAGAGGTTGGGGTATCTAGTAGTGTAAAATAAATGAACTACATGTTTTCAGTGGGATTTTTCCTTTTGGCTGACTAAGAAAAAGCCAAATTTGCTGAGAGCACTTTGCAAGTGGTATAAATTTTGTATGACTTGTATCTTTGAAAGCTAGCTTAGTAAATCTGAATTTTTAGTTCAAATTGTTACTCTTGAGATAGATTTCTTACATTTTCTTAGGCTGGTTATACTTTAAAATCTCTTAACTTGTATGATTATGGGAAAGAGCCCTCTAAAAGAATAGCAGTGATAATCTATGAATCTGGATAATTTGTCTCTTGAGTAAAGAGGTTAACTAGAAACAAGTTAATGGTCTGTGATCTGCTTGTTTTAAAGACTGGTTATAAAATAATTTGGGAAATTAAGTGTGTTTTCTCTTATTCCATTAACTTTAG
Seq C2 exon
GAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGAGGGAGAAGCAGATACTGAGCTTCTTCCTATTTGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005726:ENSBTAT00000007527:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATTACGGGAGTGGAAATTACA
R:
CCATGGCAAATAGGAAGAAGCTCA
Band lengths:
206-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]