RnoINT0071396 @ rn6
Intron Retention
Gene
ENSRNOG00000011175 | Hnrnpa2b1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:RGD Symbol;Acc:1310403]
Coordinates
chr4:81237496-81238341:-
Coord C1 exon
chr4:81238219-81238341
Coord A exon
chr4:81237558-81238218
Coord C2 exon
chr4:81237496-81237557
Length
661 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TTTTGTTTGAATCATTATAGGGA
3' ss Score
7.44
Exon sequences
Seq C1 exon
GAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGAGGACCATATGGTGGAG
Seq A exon
GTAATTTAGTAAATGATAGGCAATCCTTCTGGATGGTTGACTGGGGTGGAATGGAAGTCTAAAGAGTTCATCTCAGAATGGGAAGAGAATCTGACTTTGAGATGGGAGGGTAGGTAAACTTATGTAAATGTTAGGTAATGTTTTTGGTTTTTTTTTTTTTTTGGGAGTATGAGTTGGGGCATACATTGCTTAGAACCAGGGACTCTATGTACCACGCAGAATTAGGTGATTATCTCTTGAATTTAAGTAACAATTATTACTGCCAATAATCCTTACGATGGGGAAATGGAGGCAGAAAGGTCATGTTTTCAAAGTCTTGTCCTTCATGTGAAACCATGTCTCCAATATAACACTCTGCGTTTAGCTTCTTAAAGGAGCTTTTTTAAAAAACAATTCTTTATGATTTGAAGACTGGATCCATCTTATTAAGCTGCTTGTGTTTGAAGATAATAGACTTAGAAAGATGGTATCACATTTTTTTATATGCCTATAATCCGAGGGATCAAAAGGAGTAGGATCACTTTACATTGTGGGGCAGCCAGGTATATTATGTACAGTCACAAGACAGAAGGAGAACTTGGTTTCCAGGATAAGAAAAACATGTATACAGACCCTCAGATTTATGTGTTCTAAGCCTGCATTTTTGTTTGAATCATTATAG
Seq C2 exon
GGAACTATGGTCCTGGAGGAAGTGGAGGAAGTGGGGGCTATGGTGGAAGGAGCCGATATTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011175:ENSRNOT00000015152:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=NA C2=0.967
Domain overlap (PFAM):
C1:
PF116273=HnRNPA1=WD(100=90.5)
A:
NA
C2:
PF116273=HnRNPA1=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]