GgaINT0098568 @ galGal3
Intron Retention
Gene
ENSGALG00000011036 | Q5ZME1_CHICK
Description
NA
Coordinates
chr2:32117933-32118837:-
Coord C1 exon
chr2:32118715-32118837
Coord A exon
chr2:32118016-32118714
Coord C2 exon
chr2:32117933-32118015
Length
699 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGT
5' ss Score
9.81
3' ss Seq
TCACTTCTCTGTAACTGTAGGAA
3' ss Score
8.02
Exon sequences
Seq C1 exon
GCAATTATGGAAGTGGAAACTACAACGACTTTGGAAACTACAACCAGCAGCCTTCTAATTATGGTCCAATGAAGAGTGGAAATTTTGGTGGCAGCAGGAACATGGGGGGACCATATGGTGGAG
Seq A exon
GTATGTCTTGATATCCTTTGGAGCCAGACTGGGCAAGCTTCAGTCCTTTGGGGAGGTGGGAGGGTGATAGGTAAAAATTGCTAGCTTCTACAATAGATGCACAGTACCCATGTTTGTTCTGTGTAGTATATGAGATCAATGAAAAACTGCAGCCAACTCAAGACTGCAACGTTTGTTTTGGGGAAAACAGTACCCCTGCCTCTTTCCCCTCTAGACTATTAGAAAAAACATCTTGCAGATTCCAATTAGTAAGGACTTGCAGCACAGCTTGTAACATGCACTACACTTACTGGGATTTCTCCTATTGCTTTCTTGTTCTAATGTCACCTTTTCCTGTCATTTTCTGCTTTTAGTTGTCAAAATGTTATTTAGTGGTGCATAAAACTTGCGGAATGGAAACTGAAACAAGAAACCCTTTCTTGTAAGGTTCAGTTTGCAAGTAAACTCCACCTTCGTAGTGAGGCTCAAAACTATGCAGTACATCAAATTACATGTGGCCCTGCTGAGTCTTCTAAGATTTCAGCATGTAGTTGTGGCACTTCCCGGGCATTAGTAAGAGAACTTCATGAAATGTTAAAAGCTGTGGATAGGCCATCTCTGGAAGTAAACTAGATGTTAATTTTGATAGAGTAGTCAGAAGTATTCTTAGATGGAAGTGCACTGACTTAACTGTTGTTTCTCACTTCTCTGTAACTGTAG
Seq C2 exon
GAAACTATGGTCCCGGTGGCAGTGGAGGAAGTGGTGGATATGGAGGGAGAAGCCGTTACTGAGCTTCTGCAAGCTTGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011036:ENSGALT00000017975:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.738 A=NA C2=0.950
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGAAGTGGAAACTACAACGACT
R:
TTGCAGAAGCTCAGTAACGGC
Band lengths:
190-889
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]