HsaINT0076965 @ hg19
Intron Retention
Gene
ENSG00000122566 | HNRNPA2B1
Description
heterogeneous nuclear ribonucleoprotein A2/B1 [Source:HGNC Symbol;Acc:5033]
Coordinates
chr7:26232115-26232993:-
Coord C1 exon
chr7:26232871-26232993
Coord A exon
chr7:26232198-26232870
Coord C2 exon
chr7:26232115-26232197
Length
673 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
TGCTGTTCCAACAATTATAGGAA
3' ss Score
6.9
Exon sequences
Seq C1 exon
GAAATTATGGAAGTGGAAATTACAATGATTTTGGAAATTATAACCAGCAACCTTCTAACTACGGTCCAATGAAGAGTGGAAACTTTGGTGGTAGCAGGAACATGGGGGGACCATATGGTGGAG
Seq A exon
GTAATTTATAAAAATTGAGGTTATTCAGATTTTTGTGATTAAAGGATTAGCCTTTTGTGACTTAAAGGGAAGATAACATACTAAGTAGTTTGTACTGTGGGCAGTGCTCCATGTACGGTCTTAGTGAAAATAAAGAAATTTTGCATAAATCTCCACAGAAGTACTCAGCAAGCAGTTATGACATCAAATTGGGATTAGGGATGTTGGAGGTGGGGGTGTTCAGTAGTTTAATTTCTGGTGGGGACTCATAAACAGCTAAATACAGTTGCAACCCACATTGCAAGTGGTATACATTGGAATGAGGGTCTTTGAAGTTAAATCCTTAAACCATGATTCAAACCATTGCTTAGCTTATTTTTGAGGTTTTTAGCTAGGAGTAAACTAGCTTTGTCTTGGGCTTGATGTACTTTTAAAAAAATCCCTTACTCAGTCCAAATGAGGATGAGAGGGTGAAAGGACCCTTTATTTAAAAGAATAGGGTCAGCCACGAAATAAAAATGTCTATGAACCCGAGTAATTTATCTCCTGAGTAATTCTGCTAACTGGCTGCAAAGGATTAGGATCTGCTTGTTTAAAAGACTGGATGGATATAAAATAGAATCAACTGTAGTGTTAGGCTGATCATGGGAAATCAAAGTAAGTTTGTTTTCTCTTGCTGTTCCAACAATTATAG
Seq C2 exon
GAAACTATGGTCCAGGAGGCAGTGGAGGAAGTGGGGGTTATGGTGGGAGGAGCCGATACTGAGCTTCTTCCTATTTGCCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122566-HNRNPA2B1:NM_002137:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=NA C2=0.958
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGGAAATTACAATGATTTTGG
R:
CCATGGCAAATAGGAAGAAGCTCA
Band lengths:
198-871
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)