BtaINT0074548 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020527 | IDH1
Description
Bos taurus isocitrate dehydrogenase 1 (NADP+), soluble (IDH1), mRNA. [Source:RefSeq mRNA;Acc:NM_181012]
Coordinates
chr2:96950309-96953349:-
Coord C1 exon
chr2:96953058-96953349
Coord A exon
chr2:96950415-96953057
Coord C2 exon
chr2:96950309-96950414
Length
2643 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
TCTTTTTTCCCCCTATACAGTAT
3' ss Score
8.5
Exon sequences
Seq C1 exon
CTACGATTTAGGCATAGAGAATCGCGATGCCACCAACGACCAGGTCACCAAGGACGCTGCAGAAGCTATAAAGAAGTACAACGTTGGTGTCAAGTGTGCCACCATCACCCCCGATGAGAAGAGAGTGGAGGAGTTCAAGTTGAAACAAATGTGGAAGTCTCCAAATGGCACCATCCGAAATATCCTGGGTGGCACTGTCTTCAGGGAAGCTATTATCTGCAAAAATATACCCCGGCTTGTGAGCGGATGGGTAAAACCCATTATCATAGGTCGTCATGCTTATGGGGATCAA
Seq A exon
GTAAGTCGTGGTGGCGTGACTTGACTTTCCTTGTTCTTTTCTTGAGGCCTTTGATTGCCCAGCAGTTCTGATATATATGTGCTTTATTCTCTTTTGATGTCTACTTCCATTAAGTGAGGTATGTGCTCAGTCACTTCAGTCATGTCTGACTCTTTGTGACTCCGTGGACTAGAGCCCTCCAGGCTCCTCTGTCCATGGAATTCTCCAGGCCAGAATACTGGAGTGAGTAGCCTTTCCCTTGTTCAGTGGATCTTCCTGACCCAGGGATCAAACCCACGTTTCCTGCACTGCAGGCAGAATCTTTACCACTGAGCCACCAGGAAAGCCCACAAATGAGGTATAGAATTAAGAAATGAATATATATGTGTGTATATACACACACACATAGACATTTAGATAAAAGTAAATTTGGATAAACTTACAGGTACCTATCTCACTATAAATGACTTTTTTATAGGCGTGTTTTTGTTTTTTATCTTTTTATTATGTTAAACCATATGATACAGACATTTTCATATAATTTCCTGTGGTTTAACTAAATCAGTGGTTCAGCCAAACCAGGCTGTACAATAGGATCTTTTTATGGGCTTTTTGGTGTTTGTTTTGTTTTGTTTTGTTTGCCATTTAAAAAAAACTTTTTTTTTGTTTTAATTCCAATGCCTGTGTCCCACCCTACGCTAGCTAAATCTCAATTCCATGGTGTTTTAAAGCTCTCCAGGTGATTCTAATGTGCAGACAGAATTGAGAACTACCAAAGATTATTATATTAAACATGATCATTTCGTGCATAAAAGGACAAACTAACTCAGTAGTTGAAAGCAGTCTCTTCAGAACATTCCTCCTCGGGGGAATAAAAAAAGTCTAGTTTCTATACTAATGTACAATTAGGCTTGTTGCCAAATTAAACAGAAACATTACCAACTAAACAAAATAAAAATTCTGTGTTGAAACTAAAGTTTTAGACTTTCATAGAAAGCAGCTCATGTCTTAGAAGAACCTTAAAAACAAGAGTCTCTGTCCCTGACACCCAGAGGCTTTGATGTCACCATCGTTAAAAATAGTACGGGCAGAGCAGACCACTCTCTGTTGCTGGGGGCTGGGTTACCAGGTCAATCCTTGAGCGGCAGTTCACTTTGTTCTACTGTATATTTCAGGATATCCCTTCATCCTGGCAATTCCCTTCACAGATAATTCTCAGAGGCTCAGAAGAGGGAATGTAAATGAGATTGCTTACAGACTCACTAGTCCTGGGAACATGGCTCTAAGTTGTATCCTTTTTTTCCTTTTCCCTTTTATAAAAATTAGTGTGGCATCAATCACTGGAAGAATGGTCATTCTGTTTACTAAAGTCTACTAGATTGAAAATTGCAAGCATCTAGAAAGCATTTATGGTACTTTGACACCTTTTGAGAAATGAGAATCAATTACTACCCCTAAATATCAGAAATGTTCTGCATAGAATAGATATTAGTCTGTCATTATCTGACAGCTCTTCTTTCAGCTGTCTTTAGTATTGCCATAAACAAAGATAAATAAGTGTGACTGGCATCTGCTGGTACCTGACTCTGAAAGTATTCTAATCTAAGCCATTGAAGAAGGTACAAGGCAGCAAATATTGACATATGCCTAGTGTGGGCTGCGGATTTTTTTCCTTACCTGTGACAGAGGTAGCCGTCCTTAGAAGGCCCTTTCTTAAGGGTCATCAGCCTACTGCAGCTGCTTCCAGAATGATTGCTTTCTATGGGCAAGTCCTGGGCTGGGCCTTAGTAGAATGATGTTCATGAAGAGAGCAAGCCCTGAAGGTCCAAGGACCAGACCCTAAATGGGTTATTTGCATTACATCATAGTTGCTCCCTTGTAAGATTGATGGAAGAATCAAATGAGATAATGTGGGATACAGGTTAATCACTTAAAGTGTGTCTCATAGTGAGGACCAGGCATTAGCACTCTCAACATCATCTTCAATGCCATGCTGCACTTAATCACTCCGTCATGTCCGACTCTGTGACCCCATGGACTGTAGGCCATCAGACTCCACTGTCGGTGGGAATTCTCCAGGCAGGAATATTGGAGTGGGTTGCCATGCCCTCGTGGGGGATCTTCCCAACCCAGGAGTCAAACCCAGGTCTCCCACATTGCTGGTGGATTCTTTATCGTCTGACCCACCAAGGAAGCCCATCTTCAGTGCTACAGTTAGTATATTGTCATCCCCCAAGAGAAGACTTCCTTGAACTCCAGGTTATGGTCATTTCTCTTCCTCCATCTTCCAGTAGCATTTTTTATCTATGCCCGCTGTTGACATTTGGAAGCTCTTAATGTTGCTTCACTTTTGTATGACTTTGTTAGGTCATAGGCTTTGTAAGAGAGAATACTTTGTTACTCTCTTTCACACTCATATTTGTACTTGGAAAACTGCCCCTTACGTTGTAGGCACCTGATAAATACTGATTTCTAATGTGTACTCCTACTAACTAGCTTTGGGATTCTCTGGACCTCTTTATCTCCGTCTCTCAATTAGAAAGTTGGGCTACACTGTACTATTGTCCAAGTGTCTTCTAGCTCTGTATTCTATGGTTTTTTTCCCTTCATGTAATTCTTGTTAGGACAGTTTGGCGATTTCTTTTCTTTTTTCCCCCTATACAG
Seq C2 exon
TATAGAGCAACCGATTTTGTTGTGCCGGGGCCTGGAAAAGTAGAGATATCCTACACACCAAGCGATGGATCCCCCAAAACGGTATACCTAGTACATAACTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020527:ENSBTAT00000027348:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(24.7=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]