DreINT0080024 @ danRer10
Intron Retention
Gene
ENSDARG00000025375 | idh1
Description
isocitrate dehydrogenase 1 (NADP+), soluble [Source:ZFIN;Acc:ZDB-GENE-031006-1]
Coordinates
chr9:28305083-28312352:+
Coord C1 exon
chr9:28305083-28305374
Coord A exon
chr9:28305375-28312246
Coord C2 exon
chr9:28312247-28312352
Length
6872 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TGTCATCTTGACTTTTGCAGTAC
3' ss Score
7.86
Exon sequences
Seq C1 exon
CTATGACCTGGGGATGGAGAACCGCGACGCCACCGATGATAAGGTAACAGTTGAGGCAGCAGAAGCTGTGAGACGCTACAATGTGGGCATCAAGTGTGCCACCATCACTCCTGATGAGAAGCGTGTGGAGGAGTTCAAACTCAAGCAGATGTGGCGCTCTCCCAACGGAACAATCCGAAACATTCTGGGTGGCACTGTGTTCCGAGAGGCCATTATCTGCAAAAACATTCCCCGCTTGGTTCCAGGCTGGATCAAGCCTATAATTATCGGCAGACATGCACATGGGGACCAG
Seq A exon
GTAGGCAGCTCATACTTGTGTACATAAAATATTTATTGAGCCTAATTGTTTATTTGTACTACATTTTTAATTACGCTTATCACTGCCGGTTTATCAAAGTTAAGATTATTAGAAAAATAATACTTTTTTTTTTTTTTTTATCTATTATGCTACTTCCAAATCCTTCTGATGTAGATTTCAAAGTCTACAAAAAAAGAACACATAACCCAGCAATCATTTTGTTTGTTTTTAAAAGATGCCCAATAGATGTCTAATAGACATCTAAACATAGTTGTCTTGGCTAAAACAAGGTTAAATTTGGTCGGATAAAATCTGTGAAATTCTAATATATGTCTAAGAATAGGGCAAATCTAGATTAGTCATCAAATAAACAGAAATGAATGACTACACATATAAAGACTAGTTTAGTTTTGACCTATTCTTAGATGTCTGTTAGATTTTTCACTGAAAGCCCAAGTTTAGTCTTGTTTTAGTAAAACTGTCAACATTTTAGATGTCTAATAAACACAATATTTCTTGTTGGGAAGATGCATTATGAACTGCATTTTTCTCTACTATATAGTATGTGAAAAACAATTTGTGAGCCTAGTAGTAGGTCCAAATTCATAGCATGTAAAACACAGTGTGAAGTGCCCGGATGACCTACTACTTCTGGCAAGAACCCCGTGGGGACCCGGGGTAGAATAGGTCCCCAGCACCCCCTTGCTGATCGTAAGAGGCGACAAATGGGGCAACTTGTTTCAGCCGTGAGTTGTGACCCGTGTCAGTGGAAAAAGAGATCCTGGTATTTGAGGAATGTAACTGTTGCGACTATTGCAGATCCAACACAGTACTTTGGCTCCTATTTCACTTAGACGGGAGGTTGGAAGGGCCCGATCCAATCAATCGGCTAGTCAAGAAATGCCCTGGATTATTTAACTTTTTTAAACATCTAGCAAATTTCCAGAAGGCTTTGGCTGAGGGTCAATTGAGTAATGCATATTTTTAAATATGCTTGCTTGAGTATATCATTCTTATATCCTTGATGTATACCCGGTGGAGATCCGCGGCTCTGTGCATCCCCTTGTTGGGCTCCGAGGTGGGTGAGGAGTAAGAGTGATGAATCTGAAATCATACAAAAATGGCAAACAAACAAAACCCAAAAAGAAAATTATCGGATCAGGACTTGGATTGTAACTTTGGAAATGGCATCAGTCTACTACCTAAAAGTGAAAACTGGCAGAGATTTATACTTCTAGAATCTCTACAATCTGACATGCCACTCTCTAAACTGTCTCCTTTTGCTATTCAAAAAGGCATCTCTGGGATTGCAGGAACAGTGAAAGATTGTAAAAAACTAAGATCTGGACAAATTCTTGTTGAATGCTCCAAAAAGGTTCAAGCAGAAAACCTACTACGTGCAAATATGCTTGCTGGTGTTGCTATGAAAACTTTTCACCATCCAACTTTAAATCATAGCAAAGGAGTAATCCGTACCAGAGAACTAGAAGACATGGAAGAGACTGAAATTACTACAGAGTTAATGACTCAAGATGTAATACATGTTAAAAGAATCACAATCAGGAGAGAAGATCGTCTCATAAAAACAGGAACCTATATTTTAACATTCAGTAGACCTCTACCTCCAGAAAAGATTCGAATTGGATACTTGAGTGTTAATGTTGACATTTTTACACCTAATCCACTCAGGTGTTTCAGCTGCCAAAAGTTTGGACATGGATCGATTTCTTGCAAAAACAGGCCTACTTGTGTAAACTGTGGAGAGGAAAAACATGGTGATCAATGTAAAAAAACACCAAAGTGCAGCAACTGTGCAGGAGAACATCCAAGCTCATCCAAAGACTGTCCTACCTGGATTAAAGAAAAAGAAATCCAGAAAATCAAGTGTACTAAGAAGGTGAGCTATTTGGAGGCTCGAAAGCTTGTAGAGAACTCCTCATTCTTTAAATTGGAAAAAACTTTTGCTGCTGTGATGAAACCAAAACTGCAGTCTGTCGGCGTTCAGACAGATTTGATGTGGATAAATGAAAAATTTGAAGAAATAAAATCTCAAACTCCAGTAAATACTAAGTGTACTGATCATCAAAGTCAGACTGTACTTCATCAAACTCAAGTAAATCACAAAGAACATTCATCTACAGGACAACACTCATCCAAAAACAAAAATGACAAAAAACCAAATCCTCAAAAAGAAAAAACAAGCCAAGAGTATAAGGAGATGAAGACCAGCAGCTCAAAAGACATCGAAATGTCAGACGACAAAAAACCTTGAAGTCGGAGCACTTCTCCTAAAACAAAAACCAAAGGGCACTCGTATGTCTTACCAACTTGACAATGGAAAGTCATATTATTCAGTGGAACTGCCGTGGCATAAGAGCCAATTTTTCTGAATTACAACGTCTTGCTTGCATTTATAATCCCCTGGCTTTCTGTCTCCATGAGACCCATCTTACTCCAGAGAACAATATATCTCTGAAACATTTTACATGCCTAAATGCATATGGCCCAAACCTTCAACGTCCTTGTGGTGGAACATCAATATTACTTAGACATGATGTTGTTCATAGTAATGTTGACAAAAATACAAACCTACAAGTAGTGGCAGTCCGTATAACTTTGCAAAATACTATTACTCTATGTTCTGTTTATATTCCCCCAGAAGCTACTGTCTCACATCAAGATTTGGAAAATCTGGTGGAACAAATCCCCCCTCCATTTATTCTCATGGGAGATTTTAATGCTCACAATCCTCTGTGGGGAGGAAAACAACTTGATGCAAAGGGAAAGAAGATGGAAAAACTAATTAATGAAAATGACCTGTGTCTTTTAAATGATGGTTCATACACATACTTACACCCAGGACATGGATCCTTCTCTGCCATTGACTTAACAATATGTGATGCAACTTTAGCCACTGACTTCTCATGGTATGTCTGCGATGATCTCTGTGGAAGTGATCACTTTCCTTTGATTATAACCAAAACAGCCGCAGATACACAACAGAGACCCCAAAAATGGAAACTTGAAAAGGCAAATTGGTACTCATTTCAAGCCCTTTGTTATGAGAGACTTGATGGCAAGCAACAGGATAAAGAAAATCCAATCAAATGGTTCACAGAAAAAATTATTGAAATAGCAGATGAATCTGTACCAAAAACATCGACAAAACAGAGCAAGAGAAGGAATCCTTGGTTTGATGACCAATGTAAAGAACTCATTAAAGCACGGAAAAAAGCAGTAAGATGTTTTCAAAAGCATCCAACTTCTGAAAACCTTATCAGGATAAAAATTTGCAGAGCACAGGCACGGAGATATATAAGAGAAGCAAAGAGACAGAGCTGGAATAAATTTGTGTCAAGCCTGACAATAAATACACCATCAAAGAAAATATGGGATGCAATTCGGAAAATGAAAGGAAGAGAGGGACCACAACTAAAACACATCGATAATCACGGCACTCTGCTGACTAGTAAACATGACATTGCTAATATACTTGCAGAAACCTTTGCAAAGAATTCCTCTACAGAAAACTATCAGCCAAATTTCCAAAAAATCAGAACTAACCAAGAAACAATTAAATTAAATTTCATTTCCCAAAACACAGAGATCTACAATCAACCTTTTTCTATGGAGGAACTTTTAAACTCTCTAAAGTGTTGCCATGACACAGCAGTCGGACCAGACAAAGTACATTATCAGTTTCTTAAACATCTTCCCCAATTGAGTCTTTGCCTCCTCCTGGATAATTTCAATGAAATTTGGAAATCAGGAAATATCCCACCATCATGGCAAGAAGCCACCATAATTCCTATACCAAAACCTGGGAAGGAACATAAAGACCCCAACAATTACAGACCTATAGCATTGACGAGCTGCGTATGTAAAACTATGGAGAGGATGGTAAATAACCGACTTGTCTGGAAGCTTGAGTCCGATCATCAGATAAGTGATTTCCAATGTGGTTTCAGAAGAGGAAGGTGTACATTAGATCATCTCATCAATCTGGAGTCTTACATACGAAATGGATTCATCAAAAAGGAGCATGTTGTAGCTGTATTTTTCGACCTTGAAAAAGCATATGACACTACATGGAAATATGGCATTCTTAAAGATCTGTATAAAATGGGATTCAGGGGAAATTTACCCATCTTCATTTCAAACTTTTTATCAAATAGAACTTTCCGAGTTCAAGTAGGAACCACTATGTCAGACCCTCAAATACAACAGCAAGGAGTTCCTCAAGGCAGCATCCTTTCAGTGACTCTTTTTATGGTTAAAATTAATAGTGTCACAGATGTCATTGGAAGAAACATGATGTGCAGTCTTTATGTGGATGACATTTGTATATGCTACAGAGGGAAAAACATGAACATAATTGAAAGACAGCTACAGTTATGCATAAACAAAGTTAGTAATTGGTCTACAAAAAATGGTTTCAAATTTTCCAAAACCAAAACTGTATGTATGCATTTCTGTCTTTTACGATCTCTACATCATGATCCAGAACTCTTTTTGGATGAGGAACCCATCAAGATTGTTAAAGAAATAAAATTCCTTGGACTCCATTTCGATTGTAAAATGACCTTCATCCCACATATAAAGCTCTAAAGACAAATGCTTGAAGAACTTGGATCTAATTAAAGTTCTTGCAAAAACAAAATGGGGGGCAGATTCTACAGTTTTAATGAGGTTGTATAGACTTTTGGTGCGCTCACGACTGGACTATGGGAGTATAATTTACAGCTCCGCTAGAAAATCTTATTTACAAATGCTGGATCCTGTACACCACCGAGGACTTAGACTAGCTCTTGGAGCTTTCAGAACTTCACCTGCTCAAAGCCTATACACTGAAGCAAATGAACCACCTCTTCATATTAGACGCTTGGAATTATCTCTCCAGTATGCATTAAAAATAAAGACAAATCAACAAAACCCAGCTTTCAAACCAATCTTTCAACCTCAATATTTGGATTTGTATGAGGAAAGACCCAGCTATATTCAACCATTCGGTGTGCGGATCAGAACACACATAAAAAAACCTTAATGTAAATCTTGATTCCATCCACCAGACTCTCATTTGCCCGGTCCCACCATGGAGATTAAATAAGTTGCAAGTAAATCTGGATCTAAGCAAGCATAAGAAGGCTGATACATTCCCACATACATATCAACAAGCAGTTGCTGGCATAAGACATTTTTATCCTACCCATAATCCAATATACACAGATGGATCAAAAAAGGACGGTCATGTTTCTGCAGCAATCGTAATGGGTCAATCACACCACGGCCTTCGCATTCCTGATCAAAGCTCAATCTTTACAGCTGAAGCAAAGGCACTCTTTTTAGCGCTGGAACACATTGAAAATGCTGAAGGACACAATTTTATTATTTTTTCTGATTCTAAATCTTGTCTACAGACATTAAATTCTTTTAAACTGGAGCATCCCATTATTATTGACATTTTTATCAAAGTGAATGAATTACAGAGAAAGTTTTATAATATAGTCTTCTGCTGGATCCCAGGACATACTGGACTACTTGGGAATGAACAAGCTGACAAAGCCGCCAAAACAGCCCTAACAGGAAAGCTGATGGAGTGCAAAATCCCACCTTCGGATCTTAAGCCACTAATAAAAGGCTATATTCTCAACAAATGGCAATCAGAATGGGATCAGTGCCCAGAAAATAAACTTTTTGAAATTCAACCTGAAATAGGAAAAAAATCTAATTTATTTTTTAAGTCAAGACACGATGAGATTGTGTATAGAAGATGCCGCATTGGACACACGAGACTCACACATGAACATTTACTCAAAGGAGAAGAACCACCAAAATGCCTTTATTGCAACAGAAACCAAACAGTTAAACACATTTTTGTGGAATGCCCCATTTTTAATGTTATCAGAAAACAATATTTATCTGGAGAGACTTTAAAGGAAATATTTTTAAACGTGAATCCATCTAAAGTTGTAGAATTTTTATCAAAAGGAAATCTTAAAAAACTTTTTTAGATTTTTATCTTATATATTATCATTATTATTTTTATTTATAAATTTTACCTTGTACATTATTTATTGCTGTTGATGACTTTTAATTGTTAGAATATTTTTACTTGATCTATTTTCTTTTTGCCATGACATAGCCATAGAAGCTGAAATGGCAATAAAATAAAATCTCTCTCTCTCTTCTGGCAAGATTCTTAAGTGAACATCCAACGCATTCTCTTTTATCCCATGAGGCCATGGCAGAAAATATATTAACCGAAGTGAAGGAATGCACCTAACTAAATTCCACTTGCACTACTCGCATTCATACTATATAAAACATACTTTTCTATTAGTCATGAAATAAATACAAATTTAAATGTAGTACCTACTTGAGAAGTATGCTATTTCGGATTTTCAAAACAATATAACATTTTCTCAAAATATACTTTATATTGTCAAGTATTTTCTAATAATGCATACAATCCTTTAATCTCTTGATTGGTAAAATGGGCTGATCTAACAGCATATTTCAAAAATGCTCATTACATATCAGGATTTTAGCTTTCAAGGCTTTTTTAGCATATGGTGATACAATCATTAACAATTCCATCAGTTTAACTTAATTTGATCCAGAGTCTGCATCTTCTGTAAGTGTGCACTGTGCAGATTTCTAGCAAATAAACAGGTTTGTGGAGGTAAATCTGGAATTATTGAATGCTTGTTCAAAGGAGGGGGGTTATGGGGGTGATGATGGCTCCATTTATTGTGCACTTTGACCTATAACTTTGTATGCTCTTTAAAATTAAAAATAAAAAAAACATAATAAAGAGTCATTTTAAACGTTCAAAAGTCTCCTTTAATAACCTGTCATCTTGACTTTTGCAG
Seq C2 exon
TACAAGGCAACAGATTTTGTTGTGCCTGGCCCTGGAACAGTGGAAATGACATACAAACCCAAAAACGGAGGAGAGACACTGAAATTTGTTGTCCATGACTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000025375:ENSDART00000007789:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=NA C2=0.028
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(24.6=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]