RnoINT0072849 @ rn6
Intron Retention
Gene
ENSRNOG00000015020 | Idh1
Description
isocitrate dehydrogenase (NADP(+)) 1, cytosolic [Source:RGD Symbol;Acc:2862]
Coordinates
chr9:71892299-71895977:-
Coord C1 exon
chr9:71895686-71895977
Coord A exon
chr9:71892405-71895685
Coord C2 exon
chr9:71892299-71892404
Length
3281 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GCCTGTTCCCCTCTTCACAGTAC
3' ss Score
8.65
Exon sequences
Seq C1 exon
CTATGACTTAGGCATAGAGAATCGGGATGCCACCAATGACCAGGTCACCAAGGATGCTGCGGAGGCTATAAAGAAATACAACGTCGGCGTCAAGTGTGCTACCATCACCCCCGATGAGAAGAGGGTTGAGGAGTTCAAGTTGAAACAAATGTGGAAATCACCCAACGGTACCATCCGGAACATTCTGGGCGGCACTGTCTTCAGAGAAGCTATTATCTGCAAAAATATCCCCCGGCTAGTGACAGGCTGGGTAAAACCCATCATCATTGGCCGACACGCCTATGGGGACCAA
Seq A exon
GTAAGTCATTTGAGTGAATAATTTCATTTTTCATGTTTATTTTTCACAGACCTGTAGCTCTAGTATCTATGTTCATTCTTTGGGTATCTATGCCCTTAAGGAGGTCCAACATACATTATGCATAAACTATACATTTACATATGTTCAGGAAAGGGTAAAAATACAGATAAACTTTTTTTTCTCCATCTTTATTAACTTGGGTATTTCTCATTTACATTTCGATTGTTATTCCCCTTCCCGGTTTCCAGGCCAACATCCCCCTAGCTCCTCCCCATCCCCTTCTCTATGGGTGTTCCCCTCCCTATCCTCCCCCCATTACCACCCTTCCCCCAACAATCACATTCACTGGTCAGTCTTGGCAGGACCAAGGGCTTCCCCTTCCACTGGTGCTCTTACTAGGCTATTCATTGCTACCTATGAGGTTAGAGCCCAGGGTCAGTCCATGTATAGTCTTTGGGTAGTGGCTTAGTCCCTGGAAGCTCTGGTTGGTTGGCATTGTTGTTCATATGGGGTCTCAAGCCCCTTCAAGCTCTTTCAGTCCTTTCTCTGATTCCTTCAACTGGGGTCCCGTTCTCAGTTCAGTGGTTTAATGATGGCATTCGCCTATGTATTTGCTGTATTCTGGATGTGTCTCTTAGGACAGATCTATATCTGGTTCCTGTCGGCCTGCACTTCTTTGCTTCATCCATCTTGTCTAGTTAATATTTTCCAGTTCCATCCATTTGCCTATGAATTTCATAAAGTCATTGTTTTTGATAGCTGAGTAGTATTCCATTGTGTAGATGTACCACATTTTCTGTATCCATTCCTCTGTTGAAGGGCATCTGGGTTCTTTCCAGCTCCTGGCTATTATAAATAAGGCTGCTATGAACATAGTGGAGCACGTGTCTTTTTTTATATGTTGGGGCATCTTTTGGGTATATGCCCAAGAGTGGTATAGCTGGATCCTCAGGCAGTTCAATGTCCAATTTTCTGAGGAACCTCCAGACTGATTTCCAGAATGGTTGTACCAGTCTGCAATCCCACCAACAATGAAGGAGTGTTCCTCTTTCTCCACAACAGATAAACTTTCAAATACCCATCTCAACACATTTTTTCCCAAATATCATTTTGTTAAGTTATACCATATGATAGTGCCACTTTTACACTGGGAAGAACATATGCTCAGATCAGCGGCTTTCAATGCTGTCTGTGCAGTGGGATCCTTTCATGAGATTTTGCTGTTGGTAGTAATGGTGATGGTTTTATTACATTGCTTTTTTTTAATGTTTGTTTGTTTGTTGTTGTCCTGTCATAAAGCAGTTAAAAATTGAACTTTGTGAGGATCAGTGTTTTGTTTTGTTTTTAAAAAATAAACCCACCTATTCTACTGTACAGACACATAAAGAACTACCAGGGATTACATCAAACTGATCACTTCGTGGATAAAAAGTCACCCAGTAGTTGCAATGAGCCTTGCGCAAGCATTCTGTACTGCTTGGAAAACAAGTGTCACTCATTTCTGTACCCCTACAGTTAGTCTCATTGAGCAGAAAAGTTGCTAACAGCACAGATTACAAAGTCTCAGGTTTTAATAGAACGTAGCGTGTATATCAAAAGGAACCTTAAACAAAACAGGAAGCTGTTCTGCTAAAATCTACAGGCTTCTCCGAACTCATCCCTGAAAACTGTGGCCACAGCAGATGTTTCTGTGTTCCAGGGACAGGGTCACAGCAGATTCCCTAATCATTAACCTGATTAGCATACTGCCTATTCGATATTTTTTTGTCTGTCTTGTTTACTCCTTAATTCCTGTGGTTTCAGTCACTTGAGGAATGTGTTCTATTTTCTTTTCTTTCTTTCTTTTTGGAAATAGCATCTTGACTCACAGTTTAATGTCCATAGATCTGTGCAAAGTATTTTAGGGCACATTAGTGCCTTAATTACCATAGTAAAGCACTTTCAGTGTCAGAAGTGTTTAGTCTTTCTGTTACCTGACTGAACTTTTGCACACTGTGATTATGGTCACTGTAAAGCCACAGGTGTAGCTGGCACCTGCCCCTGCACTGAAAAAGGTCCCACACTACAATGGCTTGTGAGTGCCTGGACTTGTGGGTGCCCTATGTAATGGGGGCATGAGACTTCACTATAAAGTGTCTCAGGCCCATCTTGGAAGCACCCATTCTTTGAACTGCCTTAACCTGGGGCCATCAGTCTGCCATTGCTGCTTCCAGAATGTCTGCTTTCTGTGGACATGTGTCTGGTATTAGTAACAGTGATCACCACAGAGGGAGACTGAACTCTGAAAACTTAACAGCAGGTCACATCCCAGGCCACTTGACCAGGTGCGTTCTTCCCTGGTTCCTTCATGAAAAGCCGGTGCCAGAATCAGATATGCTCGGCATTCGACATTTAGATTAGCATCAGGGCATGAGGTAAGCTCTGTTGCCATCCTCAGGACTAGTGCTGGCATCCTTTCTAGCTTTCCCTCTGGATCATAACCAAGGTCATCTTTCTCTATAGTCTCATTCTACCCAGCACCCTCCACCCCTGTTTTAAAACCTCTTCAAGTCAATTCTCACCTGTCTGTCTTTACAAAGCTACAAGCTTCCTAAAGGGAAATGCTTGTGACAGATCGTTTTGATTGTCATTGTAACAGTCTAGAATCACTTGAGAATGGAGTCTTGAGAAAGAATTGTGATTTAGGTTGGCCCGTTGGTGTGTCTGAGGAAATTTTGTTTTGAATCCAGTTAATTTAAGAGGGAAGGTCCTCCCTGAACGTGGGTGGCACTGTTTCCCACCAACTGGGCCTTGGGTTGGGTGAAAGAAAGCTGAGCATAAGTGAGCATGCAAGCCTTGCTTTCCGTTCCTGCCTGAGGCGGTGAATACGGCCAGCTCCCTCAGCTTCTGCTGCTGTCACTTCCCCCTGTGGCAACCATCACCTGGAACTGAGCTAAAAGAAACCCTTTCTTCCCTAAATTGCTTTTGTGGAGTATTTTATGGCAGCAACAAAAGCCAAGCTGAGACAGAGCTGTGGGTTATTCTCCGTCCCCTCTGACTCGATCCTCATAAACCTGCAGTCTGTACCGTGGGCTCCTGATGAAGAAGCGCTAATCTTCAACATGCACTATTACTAACAAGCAGATCTCCCTCACAGAGGCCCCCACCACCCCCAACCCTAGCTCTTAAAACCAAAGAGCCCCAAGTTACACTGCTGGAGTTTGGCTCCATAATCTATTCCCCTGCCCCCCGAAGGGTTTCAGGTGGGGTACTTTTCCTAATGCCTGTTCCCCTCTTCACAG
Seq C2 exon
TACAGAGCAACAGATTTCGTTGTTCCTGGGCCTGGAAAAGTAGAGATAACCTACACACCAAAAGATGGGTCGCAGAAAGTGACATACCTGGTGCATGACTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015020:ENSRNOT00000020322:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(24.7=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(8.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]