MmuINT0080176 @ mm10
Intron Retention
Gene
ENSMUSG00000025950 | Idh1
Description
isocitrate dehydrogenase 1 (NADP+), soluble [Source:MGI Symbol;Acc:MGI:96413]
Coordinates
chr1:65168499-65171250:-
Coord C1 exon
chr1:65170959-65171250
Coord A exon
chr1:65168605-65170958
Coord C2 exon
chr1:65168499-65168604
Length
2354 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
3' ss Seq
GTATGTTCCCCTCTTTACAGTAC
3' ss Score
8.46
Exon sequences
Seq C1 exon
CTATGATTTAGGCATAGAGAATCGTGATGCCACCAATGACCAGGTCACCAAAGATGCTGCAGAGGCTATAAAGAAATACAACGTGGGCGTCAAGTGTGCTACCATCACCCCCGATGAGAAGAGGGTTGAAGAATTCAAGTTGAAACAAATGTGGAAATCCCCAAATGGCACCATCCGAAACATTCTGGGTGGCACTGTCTTCAGGGAAGCTATTATCTGCAAAAATATCCCCCGGCTAGTGACAGGCTGGGTAAAACCCATCATCATTGGCCGACATGCATATGGGGACCAA
Seq A exon
GTAAGTCATTTGAGTGAGCATAATTTGATTTTTTCCGTATTTATTTTTCACAGACCTTTAGCTCCAATATCTATGTTTGTTCTTTGGGCATCTACACCCTTAAGAGAGGTCCAACATATATTATGAATAAACTATAGATTTACATATGTTTAGGAAAGTGTAAAAATACAGATAAACTTTCAAATAAATACTCATCTTAACACATTTTCCCCAAATATCCTTTTGTTAAGTTATTCCATATGATATTGCCATTTTTGTATTAGTAAGACCATACGCTCAGATCAGTGGTTTTCAGTGCTGGTTGCGTGCTGGGATCCTTTCATGAGATGTTGCTGTTGGTGGTAATGGTGACGGTTTTATTGCATTGCTGCTTTGGTTTGTTTTGGGTTTTGTGTTTGTTTGTCTTTGTTTAGTTTCACTTCTAGTATTTGAGTCCCACCATAGAGCCAGTGAAATTTGGATTCTGTGAGGATCAGTTTCTTTTAAAAACCCCACCTGATTCTAATGTTCAGCCACATGAAGAACTGCCAGGTATTACATTAAGCTGATCACTTCGTGGATAAAGAGAAAGTCACCCAGTAGTTTCAATCAGAATGCTTGTGAAAGCATTCTGTACGGCTTGGAAGACAAATGTCATTCATTTCTGTACTGGTACAGTTAGTCTCATTGGTGAATTGGGCAGAAAAGTTGCCGACAACACAGATTACAAAGTCCTTAGAAACTGAGGTTTCAGGTTTTAATAGATAGTAGCTTATCTATCAAAAGGAGCCTTAAACAAAACGGAAGCCAGCTAACACCAAGAGGCTGCTATGGACTCATCCCTGGAAACCGTGGCCACAGCAGATGTCTCTGTTCCTGTGACAGGGTTACCGGCATGGTCCTTGATGTGTCCCATGGCTTTTGTTTCACCCTGCAGCTTTTGATAAGTCTTCATCCTGAGCATACTGCCTACTCAGTATTTTTTTTGTTTGTCCTTTTTATTGCTCAATTCTTGTTTCAGTCCCTTGAGGAGTGGATTCTATTTTCTTTTCATCTATTTTTTTTCTTTAAACTAGTGTGTTGACTCACGGTTTAATGTTCATAGATCTGTACAAAGTGTCTTAGGGAACATCGGTGCCTCAGCTGCCTTGGTAGAGAACTTTCGATGACAGCAGTGTTTGGTCTTTTCTGTTATCTGACCTTTTGCACACTGTGGTTAGGATTACTGTAAAGTGGCAGGTGCAGCTGGCACTGCCCATGTCCTGAAAAAGGTCCCGTGCAGCAGTGACCTGTGAGCACCTGGTGTGTCGGGGGCACATGTCTCCACTGTAGAGTGGCTCAGGCCCATCTTGGAGGTGTTAGTAACAGTGATCACCACAGAGGGAGACTGAACCCTGAAAATTTAACAGCACGTCACATCCCACGCCACTTGGCCAGGTGCATTCTTTCCTAGTTCCTTCATGAAAACCTGGTGCCAAAATCAGATGTGTTCAGCATTCGGCTTCTAGATTAGTGTCAGGACGTGACATAAGCTCTTCAGTCATCTTCAGCGGGAGAGCGATGCTGGCATCTATCTCACTCTACCTTTCCCTCTGTTGCCTCATTCTACCCGGCACCCCCCACGCCCATGTTGACATTTAAAACTTCTCCACCTGTGTCTGTCTTTACGCAGCTACAAGCTTCCTAAAGGGAAATGTCTGTGGTGGATAGTTTTGACTGCCATTTTAATAGTCTAGAATCACCTGAGAATGGAGTCTCAAGAAGGAATTGTCTTGATTTAGGTTGGCCTGTTGGCTTGTCTGTGAGGGAATTTTTTGAACCCAGTTAATCTAAGTGGGAAGGTCCTCCCAGAATGTGGGTGGCACCATTTCCCACCAACTGGGCCTTGGATTGGGTGAAAGAAAGAAAGCTGAGCATTAGCGTGTGTGTGCGTTGCTCTCCGTTCCTGACTGTGGTGGTGACATGGCCAGCTTCTGCGGCTGTGACTTCCCCACTGTGGTGGACTGTCATCACCTGGACCTGGCTGAAAGAAACCCTTTTTTTCCCAAATTGCTTCTGTTGGAGTGTTGTATCGCAGCAACAGAAACAAAGCTAAGACAGACAGAAGTTTATGATAGTCTCCATCCTCTCTGACTTAGTGCTCATAACGCTGCTGTCTATTCCACAGGCTTCTGATGAAGAAGATGTGCCATCTTCAACATGCACTGTTACCAACTAGTAGGCCTCCCTCATAGTGGGCCCCACCCACCCCAACCCTAGCTCTTAAAACCAAACAGCCTCAAGTTACACTGCTGGTGTTTGGCTCCAAAATCTATTTTTACCCCTTACAGTTTCTGGTGGGGTACTTTTCCTAATGTATGTTCCCCTCTTTACAG
Seq C2 exon
TACAGAGCAACTGATTTTGTTGTTCCTGGGCCTGGAAAAGTAGAGATAACCTACACACCAAAAGATGGAACTCAGAAGGTGACATACATGGTACATGACTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025950:ENSMUST00000097709:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(24.7=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types