BtaINT0077892 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24154416-24160357:-
Coord C1 exon
chr2:24160296-24160357
Coord A exon
chr2:24154577-24160295
Coord C2 exon
chr2:24154416-24154576
Length
5719 bp
Sequences
Splice sites
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
3' ss Seq
ATTTTGTTGATTTCATCTAGCCA
3' ss Score
4.78
Exon sequences
Seq C1 exon
CCTCAAGGTTAAGGCCTGTTTTGAATATACTGCTAAACCCACCGGTTACAATCCTTCAATAA
Seq A exon
GTAAGTACCTAGTACTTTTTGTTTGTTTGCTTATCTGAACATCTTTATTTTGCTTAATTTTCTTTAATTGGAGTATGATTGCTTTACAATGTTGTGTTAGGTTCTGCTGTACAACACAGTGAATCAACTGAAATTAGATCTTTTCTGTCTGCCAGGTTGAAAAGTTCTGAATAAATAACTAGACGAACAAAACTGTAATGGCCAACATGAGTCCATAAATTCTGATTTAAAGAACTAAGTCTGTCTGTCATCTTCTTTTTAATCAGGAGGGTAAAGCACAAGAGGAAAAAAATGCATTTGGTCCCAATTTGAATTTTCCAGAGCAGATGGTTTAGGGCAGAATGAATGCCTTGGATAAGTACTCATTTGCTGCCACAACCGTTTCCTCCATGTCTGTCTTTGAAAAGCAGGGTGGTTTTGTGGTTGTAAGATGGCGGGTGGTGGTTGTAGAAGAGTGACCGCGGGAGCCCGAGTCCTACTTGAATAAATTGTCAGTTTATAGTCTCTTCGCTGCTGGGTTCCCTCCCAGAGTCCTCTGTGGTCCAGAACACCCATGCTGTGTCCCTGAGGGTGGGCCCGGGGGGACCTGAAGACTGGGCTTGAACTCAGAGACTTGGGCTCTTCTCCTGGATCCCGTGCTTCAACACAGAGCTAATCCCATAATGTTTGAGTTTTTATTTTCCTATCAGTTAAAAGTAAATGCCTCTGGTGGGAATTAACTACATAGGATTGTGGCAGAGTTCAGATGAGATAAGGTGGTGAAAGGGCTTCCTTGATGGTTGAGACAGTAAAGAATCTGCCTACAATGCAGGAGACCCAGGTTTGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAATCACTACCCACTGCAGTATTCTTACCTGGAGAATTCCATGGACATAGGGGCCTGGCAGGCTACAGTCCATGGAGTCGCAAAGAGTTGGACATGACTGAGTTTTTCTTTTTCAAGGTGGTGAAAGCAGGTTGTCATTCATAAGGTCTTATTCTACTTCGCTTTTTTTTTTTTTTTTTTAAGAAGAAAGACAGGAGTTTTGCCACAGGGTTTGACAAATTTTGTTTATTTGTTTGTTTGTTTAAATTTTATTTTATTTTTAAACTTTACATAATTGTATTAGTTTTGCCAAATATCAAAATGAATCCATCACAGGTATACATGTGCTCCCCATCGTGAACCCTCCTCCCTCCTCCCTCCCCATAACATCCCTCTGGGTTGTCCCAGTGCACTAACCCCAAGCATCCAGTATCGTGCATTGAACCTGGACTGATACTCTCACAATAGTGATGATCACTGAGGCCCTCTCTGGTGTGTTTTAGTAGCAGCTGTACCTCTTCAGGAGTAAGCCAGAGTAAAGTTGGGGGGCCTAGGAATCTAAAGACATCTTTTCCCCAAAGAGGAAGTACAGAGCAAAGGTGATTTCCTTCCTGGGTCAGCCGTGGTCCCAGCGGCTAGGTATACCAGTGCAGCAGAGCCACCAAGGAAACTTTTCTGGAAAGACAGGGTGGTTCTCAAGGTTTTCAGTTTTTACTCCTCTTTGAGATGGAATGAGTTTTCTCAAGGCTTCTCCATGTTACCTTGAGTATTTCTTTTCTTTATGAAAAAAAGGTATCCCTTTATAATATCCCAGAACTTCATATATAGTCTGCCTTCACCCAATCCATGCTGTCATAAACCCACTTGGCCTTCATCTTCCCAGATTTTAAACTGTCCTCAGGAGATTTCTTCATCTCCTTCACCTTTTTAGGCCCCTTCTTCTGGGCCACCTCCCACTCTGTTGTCGCTCCATGAGCTCTGCAGACCTTGCAGTATGGTGTGCATGTATTAGGACTTTCCACCCCCAGGGGAGCTGTGGCCTTTCGCTTTGCTCTTGAAGTAGCCGGTATTTTACTGAGTATAGAAAATACTGTTCTTTGTGTGGCTTTCAGCAATAGAACATATTTTATGATTTCTCCCAATCTCTCACCCTCTCAGATTTTGTGTTGTTTTTACCCAACTGTGGTCCCTTCCACTTGCTGGCTTGGATCGTGGGGCCTTTTACCATTGTGTCTGGAAGCAGCCTAGAGAGACCAGGAAAGACAGAGACTAGGCAGGGAGAGGGAAGGGAAACATGTTTTTATTCTATTGGTCATCTTCTCAAACCACACTGTTTGCCAAAGATGTGAAATCTCATCAGAACATTTCTTATCTTCCCTCAGATCAATCATTTATACAAAATAAATTACAAACTTCCTTTTAGCATAAATGCTGCCCTTGATGCCATGTATATTAATTTCCTATAACTACCCCTACATTAACCAAGTATTTATGAATAGCCCACTATAGATTGGGCTTCCTTTGTGGCTCAGCTGGTAAAGAATCCGCCCACAGTGCAGGAGACCTGGGTTCCATCCCTGGGGTGGGAAGATCCCTGGAGAAGGGAAAGGCTACCCACTACTGTATTCTGGCCTGGAGAATTCCATGGACTGTTTAGTCCCTGGGTTGCAAAGAGTCGGACACAACTGAGTGACTTTCACTTCACTCTAGAAAGAACTTTTTTTCTCTGAAGAAATGGAAAGAGAAATTATTGCCATTGCTTCCACGGTATTGGGAAATTCTAAGTCAAATAAAGCAGAACTTGCACAAAGCTGCAAGAGTTAATACGTCTACAGTCTGTTCCCCACGTCCGAGTGTGTGAGCTTATTGTTCGGCTGCTGCTTTAACTCAGCAGTCCTTGGCTATGGTGTTCCATCCTTACAGATATTTATAATTGAGCCTTAATGACTATTCTACTTGGCTTGCCCCTGCAAAGGTCAGCAAAGGTGGCCAGCAAGGATTTTAAGATGATGTGAACTGTCTGGAGGGTCAGAAAAGGTTGGAGAGGGTTTGGTAGATAAATGGTTTTAATGCCCCCACGCACTCCCCTGCTTTTGGCATGAGGGGCACTCAGCATGTGAGCCTTCGTCTGGTTCATTGTGAAGTTAGCAGGTCACTGATAAATGGATGATGTCAAGGCTCACAGAGGGCCTAAAATGGAGGCGCATTCCATTTGGCAGCCATGACATTTAAGAATTCTTCAGATGGACACAGAAATTACTATTGAAACAGTTGTTTCTAAATTTTGGTTTTACATATGGGAACAGCCATTGTTTCAGCACAAGGATGATGACTGTATGTGTGTGCGTGCAAATGCGCGTTGGGTGTGTGCTGATGTGTTTGTTCATATGGTCTACTATCCTGTTTGTGTCAGATGTTGTGCTGTTGCTGGGGAATACAATGGTGAAGAGCTGGAGGTGGTCTCTGGAGCGGCTTTTCCTGAGAAAGTGATTGGGCATTCACAGCACAGCAGACTTAAGTGTAGCGCTGCTGCTGCTGAGTCACTGCAGTCGTGTCCGACTCTCTGCGACCCCATACATGGCAGCCCACCAGGCTCCTCCATCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTGCCTTTTCCAGTGCGTGAAAGTGAAGTCGCTCAGTCGTGCCCGACTATTCGCGACCCCATGGACTGTAGCTACCAGGCTCCTCCATCCATGGGATTCTCCAGGCAAGAGTACTGGAGTGGGATGCCACTGCCTTCTCCAGTGTAGTGATAAGAGAAATAGAATACGGTCGGACCCTCCAGGAGGGACCGGGAGAGCTTCCTGGAGGAAGTAGCATCCACATTGACATCTGAAGGAGTAGAGGTAGCCGGGCAATGAAGGAGAGGTAAAATGAAAAAGAGCGGGGTGGTCCAGCTGGCAGAAGCTTAGGGGAAGTGGGAACCTGCACATCTAAGAGGCTTTATAAGGCAGTTATCTTTTGTGTTTGTTACACAAAAGGAGCTGACTCCGTTTCTTGCTATAGGACTCTGGGCCGGTCACCTAGTTCTGTGGGTCTCCAGTTCTTCATGTGTAAGTAGAGGGTATTAGGTGCTTGCAAAAAGGTCCCTTCCAAACTCTAATGTGATTATTAGAACATGGATTCATTTTCTGGAGCAGGTTTTTTCCCTGAGGCTGGCTTCTCTGACCCTGGACACACTGGTTTGCTTTCCCTTCTGATGGTTTTGTTGTTTAGTTACTAAGTCATAACCTTCTCTTTTGCGACCCCATGGACTGTAGCCCACCAGGCCAGGCTCCTTTTGTCCATGGGATTTCCCAGGCAAGAATATTAGAGTGGATCTCCATTTCCTTTTCCATGGGATCTTCCCAACACAGGGATCGAACCTGTGTCACCTGCATTGCAGGTGGATTCTTTACCACTGAGCCACCAGGGAAGCCCCTTCTGATGGTTTTTTGTTGTTGTTCAGTTACTAAGTCAAGTCCAAATCTTTGCAACCTCGTGGACTGTAGCATGCCCGGATCCTCTGTCCTCCACTGTTTCCAGCTTTTGCTCAAATTCATGTCCGTTGATTCAGTGTTGGCATTTAACTGTCTCATTATCTGTTGCCCCTTCTCCTACTGCCCTCAGTCTTTCCCAGCATCAGGGTCTTTTGCAGTGAGTTGGCTCTTGGCATCAGGTGGCCAAAGTATTGGAGCTTCAGCTTCAGCATCAGTCCTTCAAGTGGATATTCAGTGTTGATTTCCTTTAGTGTAGACTGGTTTGATATCCTTGTAGTTGAAGGATGGTTGAAAGTGAAAGTGAAGTTGCTCAGTCGTGTCTGACTCTTTGAGACCCCATGGACTGTAGCCTATCAGGCTCCTCCATCCATGGGATTTTCCAGGGAAGAGTGCTGGAGTGGATTGCCATTTCCTTCTACAGGGGATCTTCCCGACCCAGGGATCAAACCCGGGTCTCCTGCATTACAGGTAGATGCTTTACCATCTGAGCCACCAGGGATGGTTAGTGAGTGATTAATAAATGTAAGTCATTTAAGTATTAAAACATAGCAGCTATATCCAGTGAATTGGCAAAGAATGCATTCTGAAGTTAAGAAATGAGATTTTGATCATCCAAATCATAGCTTATCTCTGAGCTCTGTTAGTGTAGGTAATCACAAGTAGGATGTGCCCTCTGGGGCTTTGGAAGTGGAAACCTTGATTCTGGGAGTTTTATTAATGGGCAAAGGGGCCCTCTAACCACTGAAAGGAAGTATGTTTTACCTTTAAATTCTTCATCAAGACATCTCCATCTCTAATATGTTTTTCCTTTTTTAGACAATTATTCTTTATGAGCGCTTTAATGTGTATAAGAACCACCTGATGATCTTACTAAATGCAGCCTCGGGTTCAGTAGTCTGGCTGGGCCTGAGGATCTGCATTCCTGACACCACACAGGAGAAGCTGCTATTGATCTAGAGGCCTTTTTGGAATTTAAGCAGCAGACTGTTGAAGAGGGAGTCAGTTTAGGTCCTTCTGCAGGGTTGGCTGCCCTCCTGTGTCGTAGTCTTGTGAGTTATTGAAATGCAGTGAAACTGATTCTTAACGCTTCTCTGAGGTTTTGACTTATTCTCGAGCTCCCCCACGTGGCCCAAAGGAAATGTAGCTTTAAAAATTGTTCACAGTAATGGGCAGGAAAGGACAGCTTGATTTGAAACTTCATAAGTCAGAATGTACATTGCCAGGAAATATGAAGGAAAACCATGGCAATGAGAAAAAATGTTCTAAGAGGAATTAAAATATATCAAAAACAAACTCAGTGTACTTATAGCTGTGTTGTGTATGAGTACGTTTTAAGTTCCTGTGATTTTGTTGATTTCATCTAG
Seq C2 exon
CCATTGTGGGCACTCTGGAGGCTGAAAAGGAAAGAAGAAAATCTGGGCTGTCGTCAAGAGTTCAGTTTCGAAACCAAGGTTCTGAGCCCAAGTATTCGCAAGAGCTCACTCTGAACAGACAGAAACAGAAGGCGTGCATGGAAGAAACCCTCTGGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.278
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(4.4=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]