MmuINT0083771 @ mm10
Intron Retention
Gene
ENSMUSG00000027111 | Itga6
Description
integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
Coordinates
chr2:71834009-71838428:+
Coord C1 exon
chr2:71834009-71834070
Coord A exon
chr2:71834071-71838267
Coord C2 exon
chr2:71838268-71838428
Length
4197 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
TTTTGTTCATTCCAACCTAGCAA
3' ss Score
4.65
Exon sequences
Seq C1 exon
CCTCAAGGTTAAAGCCTGTTTTGAATATACTGCGAAACCTTCCGGTTATAACCCTCCAATAT
Seq A exon
GTAAGTGCCCAGTACATTAAAAACATCTTCTCTCTGCTAGGTTGAAAGTTCTGTATAAATAACAGGAAAACAAAACTCTAGTGGCCAAAGTGAGCTCATAAAGTCTTGTCTAGAGGAGGAAGTTTGTCTGTGGTCTCCCCTTTAATCAGGAGGGAGGGAAGGCTCTCCATTTGCTCCCCATTTGAATTTTCCAGAGCAGCGAGCAGGTTTGGGATGGGATGTCTTGGGAGAGCACTTACCTGCTGTCACAACAGCTTCTTCCCTTTCAGTTTCTGAAAAGCCCTGTGGAAAATGGGTTGTGTGGTTGTGAGGTGAGGTGGCGGGTGGCTGTTGTGGAAAGATAGCTCTAGCAGCCAGAGCACAGCTGCGGCTGGTTCACTCGCCAAGTTAACCAGCCTCACTGACCCTCCCACGGAGACTGCAGCCCAACAATGTCTAAGCTGTGCTCAGTACGGGACCTTGAGTACCTGAAGGCTTGACCATAGGAGCAGAGAGCCGGCTGCTGCTTCTGGCTTCAGTTCTGCTTGACTCACAGCAAAGGACAAGTCCTTGGCCCTTGGGTTTAATTTTCCTGTCAGTTAAAACAGTGCCCCTAAGTCACCATTGTCTAGGGTTATGAAGCTGATCAAGGAGACAACCAGATGGAAGGCACTTTGTCTTTTAATTTATTAAATTACTGTCTTTTTCTGGCGCTCAGTGTGGGATTGGCATTCGTGCGTGTGTGTGCGTGTGTGTACATACATGTACTTACATGGTAAACCGAGCATGTGCTTTTGTGTGTAAGTATGCATGCACATATGTGTAGAAGTCAGAAGACATCTGCAAGTGTTTTCCATAATTGCTGGCTCTCTACCTTTACTCTTTGAGATAGATCTCTTGTTGAAAACGAAGCTTATTGCTTTAGCAGAGCTGGCTGGCCAGTGAGCCCCAGGGCTGGGCTGATGAGCACAGGCTGCTGTCCTTTCTTGGCTTTTCATATGGGTTCTGGAGATCCTAACTTCTGTCCTCAGGATTATACAGGACAGAGCCATCTCCACCGCCCTGGTACTGAGATGACAGGAAGGTCACTATGCCTGGCTTTAAAAAAGTCAATAGTCTGGAGATTTAAATGGTGTTTCCTCATTTTCTTGGCACTTTACAACCTGAACCATTTACCAACCTCTTGTTGCATTAATTTTTTAAAGATTTATTTATTTTATGTATATGAGTACACTGTCACTGTCTTCAGACACACTAGAAGGTATCGGATCCCATTACAGATGGTTGTGAGCTACCATGTGGTTGCTGGGAATTGAACTCGAGACCTTTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCCTTGTTACATGTTTTTTGATGATAAGCAAACACACACCTTCTTCACCTGGATGCTTTTTACCTGCATTTGTAATGAATTCAAGAAATAAGAGTAGACTGGATTCTTGTAAAGGGAGAAGAAATGAGAAAACATTTCCCCCCTCAAACCATTGTTTGACGATAAGTGTCAGATCTCACCGGTGTGCTCCATCCAACAACTGCCTTTATAGAGCGGGGTTATGAGCTTTCCTCTAGCCTTAATGCAACATCTGTTGCTATGTGCGTCTCCTTTATAGTATGTACCCATTCCATTACCTGCGTGTTTATTGCAGCCTGTGATAGGTGGGCCTCTTCACTTGGAAGAACTCTTTCATTATACTTCCACAGTAATAACTTTACAGTGAAATAAAACAGAATTTCCACAAAGCTGAAGAAGTATAATACATTCAGCATCATATCCCAGTATCCCAAGAGTGAGCTTATTGTGGGGCCACGATATTTTAGCTTGACAGCCCTCTTCGTGCGATGTTGCATGCACAGATATTTATAATTGAGCCTTAATGAGTTTTCTTGGCTTGTTCCTCAGGAGGTCAGCACAGGTGACCTACAAGGATTTTAAGATGATGTGAGTTGTCTGGAGGTTACAGAGGTCAGCGAGGGTTTGGTAGCTAAACGGTTTTAATGTACCCATGCCCTCCTCTACTTCTGCCCTGAGGGGCACTCAGCCTGGGAGCCTTCATTTGGTTCATCGGGAAGTTAGCAGGTCACTGATAAGTGGATGGTGTCAGGGCTGCAGAAGGCCAAAAATGAGGGGCATTCCATTTGGCAGTCGTGACATTTAAGAATATCTCAGATGGACAGAGAAATTGCTATTGAAACTGCCAGTGCTTCTAAATTTTGGTCTTACCTATGTGAATAGGATTTCAGTGCAGAGATTGCATCACACTGTGTGCACATGCATACGTGTCACGCCCTGCGTAGGGTGGCATGGGGCCAGGTACTCCATTCCACTCATCTGTCCTGTGGATGATATTTTTATCAAGTGTGGCAGTTGGTGAACAAGGGTGATGCAGTCTTTGTCCTTAGTTCCTCCACACTCTGCAGGACAGTAAGTCCCAGTGTATAGCCTCAGAGGTAGAATTTTCTCAGTGGCTCAGGAGGAGCCAGGACAGGCTTTTGGGTTAAAGTCTGGGTCAAGATCTGAAGAGTAATGGATTAGGGTTTAGTTTGGAGTTGGGGAGGATAGAGAGGAGGAGGAGGAGAGGGGCCAGTGCAGAAGGGGAAGGGCGGTGAGACCTGGCCTCTAAGCCTCTGTATAAAGCAGCCAGCTTTTGTGTGCCAGGTAGAGACTTGGAGCTGTTGATGATGCTGCCCTTTGCTGTAGGGTTCAGAATTTCCGTTCTTACTTTTTGGTTTTTCAAGACAGGGTTTCTCTGTGTTGTAGCCCTGGCTGTCCTGAAACTTACTTTGTAGACCAGGCTGGCCTGGAATTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATGCACCACCATGCCCGGCTGCCCTTTCTTAATTTATAAAGAGGACATTAAAACGCACAGTCTCATGGCCAGAAGTATAAATGGCTTGGTTAGTACAATGCTTGCCTAGTATGCACAAAGTCCTGGTCTAATCCCGGCGCTGTGTAAGTAAGTATAAAGCACTGGTTCCATTCTAGCACTGTATGAAGCAGGTGTGATGGTGCATGCTTGTAACTCCAGCACTCGGGACGTGCAGGAAGGAGGAGCAGTTCCAGGCAGCCAGGGCCACGTGAAATTTGTCTCAAACAAACAACAAACACTCAAAAGACATTTCCTTCCCCCTCGCATGAATGGTAGACTATAAGCTTTCTCCATTTTCTTGAGTTTTTCTTGGAGGCTGACTTCTCCTCCCTGTGTACACTCCTGTGCTTTCTTTCCTCTGATGGGTTTAGCAAGTGCTTAATGAATGCAAGTGATTGAAGTATTGGCCCATGAGAAGCATAGTTAGTAGCCCCATCCAGTGACCCAGTGAAGAATGCATTCCAGAGTCCAGAAGTGAGCTCCTGACAGTCCCGATCCTGGCCTGCCTCCACGGAGCAGCTGGCCACCTCTGCTGCAGGCTGGAGACTTGTGTATAAAAGCTGTGTGAGGCTAAACAACTGGCTTCCGGCTACTGAACACATGTCAGCCAGATCTGTCTGTCATCTACCATTCTATCTATTATCTATCTATCTTTTTAATCTGTTTTTTTCAGACAGACTCACACTGTAACTGAAGGTAGCTTTGAGTTCATGGCAGTCCTGTAAAAGAACGCACCCCTTGTTCCCAAGAACTGAGATTACAGGTGTCTCTTCCTGCTCTCAGTGACTTCTATCTTTAATATATGTGTCTCCTTTGATTACCAGTGCTATAATGCAAATACCAGTTCTGCTGTAGGAGCCTGCTTTCTCAGACAACTTTTCAAATAGCAAGGACTCTCCCCCGCCAAGGTCATGACGCATAGGCTGAAAGAGTCCCGGGGCAGGAACATTGGGGATTTCCAGTTATCTTTAGTATTCTTTGAGTTTCAGATATTCAGCCAGAAACTGATGGGTTCCTAGCTGCTGCAGAAGGTTCTAGCTTGTTCTCGAGCGCCCCCAGGTGGTCCAGTGAGAATTTAAAACACTAACAGCACTGGGAAGAACAATTGGATTAAAAACCCCTCTGGTCACCAGAAGGCCCCCTTCCAGGAGATTCTGAGAGGCGAAGGTTCTGGGGCAAGTGCTGTAAAAGAACTCATCTTCTTTGTAGTTCAGGGGGTGTGAAGATGCACTTTAAGTTAACGTGATTTTGTTCATTCCAACCTAG
Seq C2 exon
CAATTTTGGGTATTCTCGAAGCTGAAAAAGAAAGAAGAAAGTCAGGGTTGTCATCGAGAGTTCAGTTTCGAAACCAAGGTTCCGAGCCAAAGTATACTCAGGAGCTGACCCTGAATCGGCAGAAGCAGCGGGCGTGCATGGAGGAGACCCTCTGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027111:ENSMUST00000028522:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.333
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(4.4=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types