BtaINT0077896 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24151096-24151464:-
Coord C1 exon
chr2:24151275-24151464
Coord A exon
chr2:24151180-24151274
Coord C2 exon
chr2:24151096-24151179
Length
95 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
GGTCTGTTTTTCTACTACAGGAG
3' ss Score
8.28
Exon sequences
Seq C1 exon
TCACAAAGGTGTACCAGAACTAGTTCTAAAAGATCAGAAGGACATTGCTTTAGAAATAACAGTGACGAACAGCCCTTCTAACCCAAAGAATCCCACCAAAGATGGTGACGACGCTCACGAAGCTAAACTCATTGCCACTTTTCCAGACACTCTGACTTACTCTGCATATAGAGAACTGAGGGCTTTCCCT
Seq A exon
GTAAGTATTTTAAGAGACCAGCTCGGAGGGGAAAAAAAAAACAACATTGCCTGGTAAGTGAATTTTTTGTGATCTGGTCTGTTTTTCTACTACAG
Seq C2 exon
GAGAAGCAGTTGAGTTGTGTTGCCAACCAGAATGGCTCACAAGCAGACTGTGAGCTTGGGAATCCTTTTAAAAGAAATTCCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.344 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF084417=Integrin_alpha2=FE(13.2=100)
A:
NA
C2:
PF084417=Integrin_alpha2=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGAACAGCCCTTCTAACCC
R:
AGCTCACAGTCTGCTTGTGAG
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]