BtaINT0077906 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017266 | ITGA6
Description
integrin, alpha 6 [Source:HGNC Symbol;Acc:HGNC:6142]
Coordinates
chr2:24134476-24137143:-
Coord C1 exon
chr2:24137018-24137143
Coord A exon
chr2:24134606-24137017
Coord C2 exon
chr2:24134476-24134605
Length
2412 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AATACCTTGCTTCCTTGTAGTGT
3' ss Score
7.39
Exon sequences
Seq C1 exon
GTTCGCGTGACTGTGTTTCCCTCAAAGACTGTAGCTCAACATTCAGGAGTACCTTGGTGGATCATCCTAGTGGCCATTCTTGCTGGGATTTTGATGCTTGGTCTATTAGTATTTTTACTGTGGAAG
Seq A exon
GTAAGTCATATCTGGGACTTGAGTTTTGTGATATAAACTTTATTTCAGGTTTTCTTTTTAAAGTAAATTAACACTGATAGTACATACATTTTTCATTGCTTCTTTTTCCCAACATTTTATTCTATGAAATGTTTCCAAAATACAGCAAACTCAAGAATTATATAATGAAGATCTGAATACCTATCTAATATTTTGTAAAGGAATACTATTTATATAAGAGGTTTCTTAAGTGTGTAAATTTCAGTGTTTTCACATATAATATAGCATGTTTGGCAGATAATAATTTTTTAAATTTTACCACTATGACCATTTCTTTATTGCTGATCAAATTCTGAATCTAAGCCAAATTGGTTATCACCCTAATCAGAATCTGTATCCCTATTAATTTCAACTTTTGTAAAGAAATGTTCATGGCAGCAATGGGGGCTTGTTACAGTTGCAGCTAGATTAGGAAATAGGAAAGCATGAAATCAATGAATCCCAAAGTGGTCACCATAGCCTATGTCAAGCATAAGGAAGGTCTGTGTTTAATATGATGTACTTCATTATAGTCTGGTCCTGTAAATATAATGTAGTATCTTCCCTCTGCTTTCTACCAGTAAATAGTCGACATTACAAAAAATGCATGAGATGTCACATACTTTTCTTGGCAAAAGTTATCACCTATAGATCTTGGGTTATTCTCAGGTAGTAATGGAGATTCACAGACTTTTATCAACAGTCCCCAAAAACTCAAAGTTTGTAATGACTTATTTGGCAACTCAACTTGACATGATGTGAAGAGAGGATATTTATAGTCTCTATCCTTTACTCAGTTCTAAAACATTAGGATAATTACTGTGACATTATGTATGCAGTGTATTACTTTTCTAAAAGGCCGGAAATTTGGGGTTTCCAAACATGTCTGGTCTAGAGGCAAAGGATGATGAAACTCAACTACTAGTCCCTAGGATCAAACTATCTTTATCTTTTCTTTGGATCCAAGTATAATGGACAAGGACTTAAGATATTCTCACTTTCAAATATTGGGCATCTCTTTTTGCTTTATTTTTCCAAGTAACTTCCTTTTGCCAAGATAATTTTGAGATAGTTTTTGGGCATCCTCCAGTCGTGTGATTGAAGTTTGGTATCTGCTCATGCCAAGACCCATCCTCCCAGGGGAAGTCAGCCAGCCCTACCTGATGTTTACTTTAGACAGTAGGTTTGTCTGAGTGCAGCCAGCTGATATAGGAGATGCTCTGGAAATTATTTGGATATCAAAAGCTGAATGTGAGGTTTGATATTTGAGGATGGCCTTCTATTGCTCTCCAGAAGAGGTCCTATAAGGACAGTCTTTTCCTATATCTCTATATTTAGAGTGACCTAATCTGAGGAGCACAGATTACTATCACTTAAACGTTATGTGATGGCTCAGAATTTGGGAAAGTGAGAGCAATCATTATTTCATGATGGTATGTTCAAATTTATATTGTGATTTACCCCACAAAGGCCTCAAGTAGATGGCACTTATCCCTTCAAATTCACTGAAAAGGACAGGAATATATTCAGTATCTCTTTATTTGGATTTGTGCTAAGTCTTAGAGAATTTATTCTTACACTTTGAATCAGTAATCTACAGATGTCAATCTTGCATAGTTAGACTCCATATCCCCTGCAAGAAGAAAGTGTGTGCTGAGTTGTGTCCAACTTTTTGCAGCCCCGTGGACTATAGCCCATCAGGCTCCCCTGTCTGTGAAATTTCCCAGGCAAGAATGCTACAGTGGATTACCATTTTCTCCTCCAGGGGATATTCCTGACCCAGGGATCGAACCCCTGTCTCCTGCATTGGCAGGCAGATTCTTTACCACTGAGCTACCTGGGAAGCCCCGCAAGAAGAAACTACCCAAAACTATGATCAGATGTGTAAATATTTTCCCTTTTAGAATGATTTTGGCCCTTAGGATTTGTTACAAATAGAAAAATCAATTTCCTAGTGTCATCCATATAAATATTTGACCAGAGACCCATGGTAATAGAGTTGGGTTAACTGACGTCACTGGGGCTTCCCAGGAGGTGCCATGGTAAAGAATCTGCCTGCCAAGCAGATCCCTGGATCAGGAAGAGTCCCTGGAGAAGGAAATGGCAATCCAGTCCAATGTTCTCGGCTGGAAAATTCCATGGACCGAGAAGCCTGGTGGGCTATAGTCCATGCAGTCTTTATAAAGAATCAGACAGGACTTAGCAACTGAGTATACAGCACACTTGATGTCACTGTGTCATATGGTATGGGGTCTGTTCCCTTTTGGTTGATCCATAGTGGTCTCTTTGTAAGCAAGCTGTAAGTAGGAAACAGGTTAAACTTTGAGATTTTTCTTTTGTTTAGCTTTTATACACAGAACTGTAACACTGACTAAATACCTTGCTTCCTTGTAG
Seq C2 exon
TGTGGTTTCTTCAAGAGAAATAAGAAAGATCACTATGATGCCACATATCACAAGGCTGAGATCCATGCTCAGCCATCTGATAAAGAGAGGCTTACTTCTGATGCGTAGTATTGATCTACTTCTGTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017266:ENSBTAT00000022960:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.114
Domain overlap (PFAM):
C1:
PF151761=LRR19-TM=PU(51.4=85.7),PF0035715=Integrin_alpha=PU(0.1=0.0)
A:
NA
C2:
PF151761=LRR19-TM=PD(45.7=88.9),PF0035715=Integrin_alpha=PD(86.7=36.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]