BtaINT0078452 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020455 | ITPR1
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 1 (ITPR1), mRNA. [Source:RefSeq mRNA;Acc:NM_174841]
Coordinates
chr22:21790919-21793665:-
Coord C1 exon
chr22:21793471-21793665
Coord A exon
chr22:21791171-21793470
Coord C2 exon
chr22:21790919-21791170
Length
2300 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
TGCAACTTTCCTTTTCTCAGGTA
3' ss Score
9.57
Exon sequences
Seq C1 exon
GTTGGTGCTCTCCCGTTTTGAATTTGAAGGCGTTTCTACCGGAGAGAACGCTCTGGAGGCAGGCGAGGATGAGGAAGAAGTATGGCTCTTCTGGAGGGACAGCAACAAGGAGGTTCGCAGTAAGAGTGTCCGGGAGCTGGCGCAGGATGCCAAGGAGGGCCAGAAGGAAGACCGCGACGTCCTTGGCTACTACAG
Seq A exon
GTGCGCGGGCCTGTGCACGGGCGCCCTGTGATGTCCTCTCATGAGACGTCCAGCAGAAAGACAAATGTGTATTTCAGGAGTTTGTAGAGTGTGAGCTGTCAGCAGTGCTTACATAGTAGGGCAGTGCTACCTGGGCGTGGCTTGGTCACAAGGAAGCTGCTTGGTTGCATCAGCCCCGTCTCACAGTTGTTGGTCTCTGCACGGGGTAGCACATGGATGTAGTTTGTGGTAGATACGAGTCAGGCTGTGGGGTCACCTCTCTACATACTGACTTTTTAAAAAATTTTTCATTTTATGCTAGAGTATAGCTGATTAATAATATGATAGTTGTATCACTGTCAGGGACGCAGCCGTACATGTACCCATTCTCTCCCAAACTCCCCTCCCATCCAGGCTGCCACATAGCATTGAGCAGAGTTCCATGTGCTATACAGTAGGTCCTTGTTGGCTATCCATTCTAAATATAGCAATGATATTAACTTTTTGACTTTGGTCCAGTTATCCACCTCTATGTCCCAGTTCCTTTACCTGCAAAACGGAGACAATGTGCCAACCTCTTAGAACTGTTACAGGCAGAGCTAAGAAATGTGCATGTGTATGCACACATCTGTTGATGTCTCTATCTGCATACACACACACATTTGTTTCTGTATTAATGTATATGAATGTAATAAAAACCCTGAGTTCACATCACAACTTTCAGCTCCACTCCAGCACCATAGGGTCGTTCTCATCTTCACCCTCTGTATCCACAACTCCTTCCTCGGACAGCGAGAACCTGCCGTGTTGACTGGTTTCCACCCCCATCCTGGTGTTTCCTTGGTCCCAGCTGTAAGACCTGTTGACTCTGCCACCTCAAGAGAAGGGAACCAGTAAACACTTGAAAAAGAAAAGAAAACAGGAGATGGTTGGAGAAGTGCTAGCAGCATTTTCTCATAAAAACTCAACTTTGCAGTTCCAGTGCCCTTTGTGACCCTCCTGTATTTTGTTCTCTCCGTTCACGCAGATGGTGGGTGACCTTCCACACTCTATGTATGTTCATATTTTACATTTCTGTGCATTCATAAATAACACATAGTATTTTAATGAGCCTTGAAATTTTATATAAATGGTTCCATACTCTGAGTTTTTCTCTGAAATCTGCCCTTTTTATTCAGTATTGAATCTGAAATGGATTCATGCTAATGGTGGTAGGTCCATTTCTTTAATATTGACTGCTGAATGTTATTCCATTTATTACTATGCCAACATTTTCTTTTCTCTTTGAATTCATTGTGTGCCACAATTTAGTTTTTCGTGTCAGGAAACATCATTGTTCAGATTGGTGCGTGTGTGTAGGAATTTCCATTCCATACCAGGAAATTATGAGATTGGGGCACAGGCATATTTTAAACTGATTAAGCAAGCAATCCTAGACTGGCTGTTTTGGTGCACGCTCTCACCAGTTGTAAATGAGCACTTTTGTTTCTCTTTGTCTTTGCATTCTCTGAATATTATGACACTCTAATTTTTGTTGATGTTATGAGCATGTAATAGACCAAGTTTGGAACTTCACAGAGATCACATGTAATTGGGTGAGGAGGAAACCTTAAGACATTTTGAGGAGTCCCCTACTTTTTCCATGATGTTTGTCACATGTGTGTGAAGTCAAAGAGCAGAGCTGTATGAGATAAGACCCCGAAAGTGTCATAAAATTTCTAAGGAGACTCAGTGAAGGTCTAAAACCTTTACCATTTCCTTTGTGGTCTTTAATGTGCTGTACAAAAGCCAAACTAAAGTAGGGCTTCCCTGCTGGTCCAGTGGCTAAGACTCTGAGCTCCCAATGCTGGGGGCCCAGGTTCGATCCCCGGTTAGGGAACTAGATCTCACATGCCACAACTAAGAGTTTGCATGCCACAGTGAAGACTGAGAATCCGTTGTGCCCCAACTAAGACCAGGCACAGCTAAATAAATATTTTTTAAAAGGCATAACTAAGGAAATAGACAATCGTTTTCACCCTAATGAAAATGATTTTTCATTTTTTTCTCCCCCATTTTATAAAATAAGGGCAAAATGGAATCAACTAGCCACGTAGGTACTCCCACATGGGATAGACATGTGTGACTGTTGGCATGGCTTGAGCTGTTCCTTTTTCTGCCGGATACAGAAGCCAGACTTAAGTGTACACGAGCAGGTGAAGAGTGTTGATGTACAAGTTCACACGGCCATACACCACTCCTGTGAGATCTGGGCCCCTCCTCTGACTCTCCCGCTGTGTGTTTCTGGAAGTGTGAGCTCTGTGCAACTTTCCTTTTCTCAG
Seq C2 exon
GTACCAGCTGAACCTCTTTGCGAGGATGTGCCTGGACCGCCAGTACCTTGCCATCAACGAGATCTCGGGCCAACTGGACGTGGATCTCATTCTCCGCTGCATGTCCGACGAGAACCTGCCCTACGACCTGCGGGCATCCTTCTGCCGTCTCATGCTCCACATGCACGTGGACCGAGACCCCCAGGAGCAGGTCACCCCCGTGAAATACGCCCGCCTCTGGTCTGAGATCCCCTCCGAGATCGCCATTGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020455:ENSBTAT00000054653:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(3.9=12.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]