RnoINT0076633 @ rn6
Intron Retention
Gene
ENSRNOG00000007104 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor, type 1 [Source:RGD Symbol;Acc:2933]
Coordinates
chr4:140417149-140420063:+
Coord C1 exon
chr4:140417149-140417343
Coord A exon
chr4:140417344-140419811
Coord C2 exon
chr4:140419812-140420063
Length
2468 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTTCTCTTGATTTTCCCCAGGTA
3' ss Score
11.01
Exon sequences
Seq C1 exon
GTTGGTTCTTTCTCGTTTTGAGTTTGAAGGCGTTTCCACCGGAGAGAATGCTCTGGAAGCTGGGGAAGATGAGGAAGAGGTGTGGCTGTTCTGGAGGGACAGCAACAAAGAGATCCGTAGCAAGAGTGTTAGGGAATTGGCACAAGATGCTAAAGAGGGACAGAAGGAAGACAGGGATGTCCTCAGCTACTACAG
Seq A exon
GTGAGTGGGAAGCATGATGGCCTTGGGCCAAGAGGGAAGCATGTGGTTTTCTTGTTGCTCACTCTAAGGCATGGTTCTCAACCTGTGGGAGCCAAAGCACCCTTTTCCAGGGTCACCTAAGACCATTGGAACACACACTGCACTTCATAACAGTAGCAAAATTATAGTTATGAAGTAGCAGCAAAAATAATTTTATGGTTGCGGTCACTGTGACACAAGGAACTGTATGAAGGGGTTGGAGCATTAGGAAGGTCGAGAACCACTGCTCTGAGAAATAGTGTGGTGTCCTGCAGTACGACTGTCCAACAGGAAGTCCGATGTATGCTTTATGAAGATTAAGCAGAAGATGCCAGGGACTTACAGTCTCTGGTTGTCTTTGTGTGTCCATGTCATAGGAAGGGCAAGAGCGTGCATCAGCCTGTTACACTTGACCCATAAACAGCACATAGTATATAGTGTATATAGTGCAGGCAGCAGCAGGCAGGCTGTGAGGTCATGCTGCATCTGGCCAAATCCTGATCTCTTTACTTAACTAGCCTTTTTGCTTTGGCTGAATTTGCCTTTATGTTCCAGAGCCCTTATCTTTAAAATAGGGATAATAGTGCCAGTCTTCCAGAAAATTTACAGAAACAGAGAATGTCTTTCCATACGTGTGCACACACCTAGGTTTTCATAATCTATTTATCCATGTTCATATATGCAAATCTATGATAAATAGCATGGGTTTGCAGTAACATAAGCTATGTAGCCCTAGTCTAAAAATTCTGAAATTGAAATACAGAACTGGTGAAGCCCCAAGCATGATATTCAAAAGGATTTAGATTTTGGAGCATTTTAGATTTTCAGATCAGCAAAACTCAAATGATAATGTTTACGCAAACTGGTACCTGAAATGCTGGTCTGACGTATTTCCGATGCAGGGTGCTCAGTGCGTTCTTTCAGTTCTGTCCTAAAACCACAGATGCTCTCTGGCTGTTACCCTCCAGCTGCTATCCTTCCTGGGATGTTCACCTGTTTGCCTGTGTATGTCACTGTATGTCACCACTGTCCACCTCTCTTGACCTCCTTAGTTCCTGGTTTTGGCCACAGCTCCAAGGCCACATAGCCTTGCCACATGAATCAGGGAAAAGGAAAGAAAAGGAAGGGAAGTCAACTACTAGATACCTCTGAAAAGAAAAGGAAGAAAACTGAGTACTTCTGCTATTTCCTAACAAGATGAACGAAACTTTGCAGCTAAAATTCCTTTTCTTACTCCTATATTCTAGGCTGTTCTATTTATACACATGGTAGTCTTTTTTTTATTATTGTATGTTAATGTTTTTAGACCTTTTTATGCATTGCCTGCATGTATGTTCCTGCATACCACATGGATGTTCACTGCCGTGTAGATCAGAAGAGGGCACTGGGTCTCTTGGAACTGAAGTTATGGGTGGTTGTGAGCCACCCATAACTGGGCACTGAACCTAGGTCTCCTGAAAGAACAAGTGCTTTTAACTGCTGGCCCATCTCTGCAGCTCCTCCTGGTTATGATTATACGTGTGATTACACGTGTGTGTGTATATGTGTCCTATTGCTCAGATTTTATGTAAATGGCACCTTACAGCAGATACCATTCTAGAGCTCTCCTTAGTTTGATTTCTGAAATACATATGAAAATATAACTTCAGTGTCAATAGGGGAAGACTGTTTCTATAATTTTTACTGCTATATGCCTTCATTTTGCTAATATGTCACTTTCTGTTGGCCTTTGGCATTCCTTCATATTCCACAGTTGAGTTCTTCATGCGAGGGCACATCCTCACTTAATTTTGTGTACACACGAGTGTCCACTCCCTTTGAAGAGGTGGATGGATGGGAACTCATATTTTTTACCTTAGTAAGCAGTACTACATTGATGATTCAATCTACATTTTTACCATTAATAACCGTCATGATATGGGACTGCTAAAGATATTGTAGAATTTTAATTACACTTTAAATAATCGATATGTGTGACATTTCCTGCAGAACCTTTGACATACTGTATGAAATACAGGGGTTACAGAGAGAAAGTAGGAGCAGAACAATAATCATCCCAGGTTTTGCATTTTTCTCTGTTTTATAAGATAAAGATGGTGAATGTAATTCACCATGAATATAACATGTTTGCTTTAACATAGCTGGACAGATGTGTGACCGTGGGATGCTGACCCTTACTTTCTGGCATCCTATGAACTTTTCTTCCATCTCCTTAATTCGGAATCTAAAATTATATGTACAACAGTCATTTAGGGATGTTGGCATAGAAGTTTAGTGGCCACATTTCACTCCTATAAAACATGAGTGAGTAAATGATTTCTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAACTAAATCCCTAACCCCGAGTAAATGATTTCTTGATTGTGAGCCTTCTCTTGATTTTCCCCAG
Seq C2 exon
GTATCAGCTGAACCTCTTTGCAAGGATGTGTCTGGACCGCCAGTACCTGGCCATCAATGAAATATCCGGGCAGCTGGATGTTGACCTCATCCTCCGCTGCATGTCCGATGAGAACCTCCCCTATGACCTCAGAGCATCCTTTTGCCGCCTCATGCTTCACATGCATGTGGACCGAGATCCCCAGGAGCAGGTGACCCCTGTGAAATACGCCCGTCTGTGGTCAGAAATTCCCTCCGAGATCGCCATTGACGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007104:ENSRNOT00000040255:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(3.9=12.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]