DreINT0083632 @ danRer10
Intron Retention
Gene
ENSDARG00000074149 | itpr1b
Description
inositol 1,4,5-trisphosphate receptor, type 1b [Source:ZFIN;Acc:ZDB-GENE-070604-2]
Coordinates
chr11:35675292-35676651:-
Coord C1 exon
chr11:35676466-35676651
Coord A exon
chr11:35675544-35676465
Coord C2 exon
chr11:35675292-35675543
Length
922 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CTTCTGGTTCATTTCCTCAGATA
3' ss Score
8.39
Exon sequences
Seq C1 exon
GCTGGTGTTGTCCCGGTTCGAGGTGGAGTCTGGAGAGGGTCCTATGGAGTCAGAAATAGACGAGGAGGAGGTCTGGTTGTTTTGGAAGAACAGCAATAAAGAGGTGAAGAGTAAGAGCATCAGAGAGTTGGCACAAGATGCCAAAGAAGGCCAGAAAGACGACCAGGATGTCATTAGTTACTACAG
Seq A exon
GTCAGCCAAGCTTACAGTTTATAGAAAAAACTTATCTGAACATAATTTGAATCATAAAATGCTATCTGGTCTTATATATATTATAATATATATATATTGGTTTATATATATATATATTTTTTTACTTTTATTGTTGTATGTATGTATTAATTAATTTTTAAAATATGTTGTATTTTTTGTAGATTTGGTTATTTACATCATCTTAAGCTACTAATTCCATTTTTGTTTAGTTTATTTTTAATGTTTATGTTTTGTTTTATTTCATTAAATGACTTTAGTTTTGTTAGCATGACCCAAACTGTTGGGTGAAAAGTTTATTACATTTAAAAATATATATATTTTAAATTTAATAATGTTTTTGTTTTTTATTATTGTTTAGTTAATGCTTAATCTGCTTTTTACTACTGCAACATGTTTTTATTTTCTTTCGTTTGTTTTTATAAGTTAAAGTTATATTTGTATATTATATTTATATAGTTATATTTTTATTATTGTTATTTGTTTCCTGTTAATGTTTATTTTATTTCACATTATACTTCAAATTTTTGTAATTGATTACGATTGCTTTCATAAATGACTAAATGTTTTCAAAATGGGAATTTTTCCTAATTATGTTTGAGTTGGCAATCAACAGAGTATTTCCAGTAATATTTTTTTCTTCTTTCTTATTTGTTTTATTGAAAATAAATTCTCGCAAATTATTCTGTGCTGTGATCATGGCAAAGAAAAAAAGAAATGATTGCATGTTAAAGAGTGATGTTTAGTAATGTGTTAAAAATCTTTCTGTTAAACAGAAAATTGGTGAACAAAGTATACATGGTTGCTAATAATTCAGAAAGGTTAATAATTCTGATCTCAACTGTAAATCCAACTGAGAAAATATTTTTCCTCAAAATCTCACCCTTCTGGTTCATTTCCTCAG
Seq C2 exon
ATATCAGCTGAATCTGTTTGCTCGGATGTGTTTGGACCGCCAGTATTTGGCCATTGAGAAGATCTCGGGCCAGCTGGATGTGGATCTGATCCTGCGTTGTATGTCAGATGAAGACCTGCCCTATGACCTCCGGGCCTCCTTCTGTAGACTGATGCTTCACATGCATGTGGATCGAGACCCACAGGAGCAGGTCATGCCTGTCAAATATGCCCGGCTGTGGTCCGAGATCCCCTCCAAAATCGCCATCGATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074149:ENSDART00000031993:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.079 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(3.9=12.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGACGAGGAGGAGGTCTGGT
R:
ACAGCCGGGCATATTTGACAG
Band lengths:
348-1270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]