BtaINT0078560 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7722091-7723196:+
Coord C1 exon
chr23:7722091-7722233
Coord A exon
chr23:7722234-7723096
Coord C2 exon
chr23:7723097-7723196
Length
863 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
CCGGCCCTGGCCCGCTGCAGGAA
3' ss Score
6.15
Exon sequences
Seq C1 exon
GGTGCGCAGGGCCGCACAGGTCGCCGGAACGCTGGGGAGAAGATCAAGTACCGCCTGGTGGCTGTGCCCCACGGCAACGACATCGCTTCCCTCTTCGAGCTGGACCCCACCACGCTGCAGAAGACCGACTCCTTCGTGCCCCG
Seq A exon
GTGGGTGGGCACTGTGGGCCTGGGGTTGGCGGGGGTTGCCTGGGCTAGTATCCGGACCCCCAGTACCCCCTGCTCCTCTGTCCTTCCTTGCATGACCCATCCCTCTGGAGATCCAGATCCGAGGCAGCTGTAGGGAGCTCACCGCCGCTGAACTTGGCATGTGCTGGGCCACGGGCCCTGCACCCTGGGTGCCGCCTTCTCTCCAGTGTTCTTTACAGCCAGTTGGCCTGGGGCTCAGGACACATTGGGTGCGGGGGACGGACTCCTTAACCTTTAAGGTCTTCCAACCTGGAGATTTTAGGATGGAACATCAGGAAGCTTCCTGGGTGTCAATCAGGCTTTAACATTGACCTCAGGCAGCTGACTTGGTCACTTGGCCCAGACATCCTCACCTGTGTAGTGGGATTATCAAGTTACCCATCAAAGGGCTGATGGGAGGATTACCCAATCCCTTATCTGCATCTTGAGGCCAGATGTACTTGGAGGTTCAGATTGTTTTTCATTTCTGAAAGGTAGTTGTGTTTCACCATCAAAGACATGACTATTTCTGACGTGAGACGCAGGCATGTTGACACTGAAAGGGATAAATAGTGTAAATAACCTCATTTGTCCAAAGAATTTGGGTCCCGAGCTTGCATGCACGCCTGGGCTCTTGGAGTGCGTGGGTCTGGGGAGAGCGGGCGAGGTGTGAGGGCCTGGGGTTTCTCTCCTCTGGCTCCTCACCTGGGGGGGACGGGCGCCCTTGGCCCACGGCCGCTGGCTGTGGAGGCAGGAGGAGGATGCAGGGCCGCGGGGGTTAGAGCCGGCAGATGGCCGGGAGGCGCTGCGACGCGCTCCCTGCGCCCGGCCCTGGCCCGCTGCAG
Seq C2 exon
GAACTCCTACGTCCGGCTGCGGCACCTGTGCACCAACACTTGGATCCAGAGCACCAACGTGCCCATTGATGTCGAGGAGGAGCGGCCCATCCGACTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.208 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.5=100)
A:
NA
C2:
PF0281514=MIR=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTGGGGAGAAGATCAAGT
R:
GATGGGCCGCTCCTCCTC
Band lengths:
206-1069
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]