GgaINT0141513 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4462433-4462807:-
Coord C1 exon
chr26:4462665-4462807
Coord A exon
chr26:4462533-4462664
Coord C2 exon
chr26:4462433-4462532
Length
132 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGT
5' ss Score
10.27
3' ss Seq
AGGCGCGGTGCCGTTTGCAGGAA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GGGGGGAGCAGCCGCTCCAGCCGCAGGAACACCGGGGAGAAGATCAAGTACCGGCTGGTGGCCGTGCCTCACGGGAACGACATCGCCTCCCTCTTCGAGCTGGACCCCACCACGCTGCAGAAGACGGATTCCTTCGTCCCGCG
Seq A exon
GTACGTGAGCATGTGCCAGCATGGAGGGGTTGAAATAAGGAGGGAGGGTTAATTGTGTGCTGTGCTGGGGCCCGTTCTGCTCCTGGAGGGGCTTTGCTGGGTGCGCTCACCGAGGCGCGGTGCCGTTTGCAG
Seq C2 exon
GAATTCGTACGTGCGGCTTCGCCACCTCTGCACCAACACCTGGATCCAGAGCACCAACGTGCCCATTGACATTGACGAGGAGAGACCCATCCGCCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.5=100)
A:
NA
C2:
PF0281514=MIR=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACACCGGGGAGAAGATC
R:
ATGAGGCGGATGGGTCTCTC
Band lengths:
218-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]