RnoINT0076729 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5678576-5680019:+
Coord C1 exon
chr20:5678576-5678718
Coord A exon
chr20:5678719-5679919
Coord C2 exon
chr20:5679920-5680019
Length
1201 bp
Sequences
Splice sites
5' ss Seq
CCGGTGGGT
5' ss Score
7.85
3' ss Seq
GGCTGTGTCCTCTCGCCCAGGAA
3' ss Score
7.72
Exon sequences
Seq C1 exon
GGGGCCCAGAGCCGCACAGGCCGCAGAAACGCCGGCGAGAAGATCAAGTACCGTCTGGTGGCTGTGCCACATGGCAACGACATCGCGTCTCTCTTCGAGCTGGACCCCACCACGCTGCAGAAAACCGACTCCTTCGTGCCCCG
Seq A exon
GTGGGTGTGTGCCACCTGCCTGAGACCCCCTGGAGCCCCAGCTCTGAGACCCATTTGCAGCTGGCCTGTATGCAGGACCAGCCCCGTTGGCTGCACCCAGGCCTGCTGTGTTTATACAGATGCTTCTCAGCCTCTCAGCCCGGCCCAGCTAGGTGGTCAAGCATGAGGTGTGAAAGTTTGTTCACAGCCAGGCAGCCTGGAGAACCCAGACTGGGGAGGTCAGATTCCCGTGCCTGTGAGGTCACTGGCTCTGAGAACGTAGGATGTCACATCCAGAGGTTTCCCGAGGCTGTGGCTTGGTTGGTAGAGTGCTTGGCTGGCGTATGTATGTAAGCGAGGAAGGTGGCTCATGCCTGCAGTTCCAGCGCCCAGGAGATGGTCACGGGAGGTGGAGCACATCCTCCACTGCATCGTGAATGTGAAGCCAGCTGGGCCTTCAGGAGACCTTGCCTTTACGTATTAATAAATGAAAGGAAATACAACAGGGTTGCAGAAACGATTCTGCAAACGAACCATTGTCTGTCCAAGGATGAGGACCAGAGTCTGGGTATTCAGAATCCACTCGAAAGCCAGGTGGGAGGGAGGCCGGCCCCCCAGCATGAGGCAGACTGGGAATCTTTGTGGCCAGCATGGCTTGCTAGACGCTGCAATGTATCGAGTTTCTGGTTCAACAAGAGACCTCGCCTCTAGATAAAAGGTGGAGCACAGTGGCAGCCTCCAGCCAGGAGCACACACACATGTGCTCAAACCTCTGTACATCCGTGTGCACGTGAGAACATGCCTATGCACACACATGTATGTGCATGCCTCAAAACAAAATTCTGTGTCATCCAGGCCTCAGTGCCTTCTAGCTATGAGACCTCAGGTGCCTCTACCACCCGCCTCAGTCTGTCATCTGTAGATGGGAACATCAAGTGTCTGCCACTAGGATTCCTGGGGAGTTAGTGACCTGTTAGCCCCTTGCCTGACACTCTTGGATGCTTGCTTTGTCCGGGTGAATTCTTGCCCCACGTTCACCAGCAAGCATTAGTTTAAGGGTGCACCAAAGTCTGTGTGCCTGAGAGCCTAGCAGCAGGGGTGGGGCCCCTCATTCTGTGGAGGTGTGGGGAGCAGAGGAAGAGGATGCTGATGGGGAGTGGTGAGCAGAGAGCAGCTCGCGGTCTGTGGCACCCTCGCTCACTGGCTGTGTCCTCTCGCCCAG
Seq C2 exon
GAACTCCTACGTGCGGCTGCGGCACCTCTGTACCAACACCTGGATCCAGAGCACGAACGCGCCCATCGACGTGGAGGAGGAACGGCCTATCCGGCTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.088
Domain overlap (PFAM):
C1:
PF0281514=MIR=FE(23.5=100)
A:
NA
C2:
PF0281514=MIR=FE(16.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACAGGCCGCAGAAAC
R:
GATAGGCCGTTCCTCCTCCAC
Band lengths:
222-1423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]