DreINT0083722 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21265132-21265461:+
Coord C1 exon
chr8:21265132-21265250
Coord A exon
chr8:21265251-21265361
Coord C2 exon
chr8:21265362-21265461
Length
111 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
ATCTTTTTCACTGCCTACAGAAA
3' ss Score
8.05
Exon sequences
Seq C1 exon
AGAAGCCTTGGAGAAAGGATTAAATATAAGCTAGTCGCAGTGCCTCATGGGAACGACATCGCCTCTCTGTTTGAGCTGGACCCGACAACACTGCAGAAGACTGATTCATTTGTGCCAAG
Seq A exon
GTATTACGTTGTGTGCTTTTCTCTCCCTTTCTCTCGGTTTGACTGGCTGCATTCTGTGGGAAGAAGAACTTGATTTACCCCCTGTCTGTTTATCTTTTTCACTGCCTACAG
Seq C2 exon
AAATTCTTATGTTCGATTTCGCCACCTGTGCACGAACACTTGGATCCAAAGCACCAACATTCCTATCGACATCGATGAAGAGCGGCCGATTCGATTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.003 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PU(43.2=95.0)
A:
NA
C2:
PF0281514=MIR=FE(37.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTAAATATAAGCTAGTCGCAGTGC
R:
CATTAATCGAATCGGCCGCTC
Band lengths:
202-313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]