BtaINT0078581 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7739385-7740764:+
Coord C1 exon
chr23:7739385-7739585
Coord A exon
chr23:7739586-7740512
Coord C2 exon
chr23:7740513-7740764
Length
927 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
TGCCCTCTTCCTGCCCACAGCTG
3' ss Score
12.09
Exon sequences
Seq C1 exon
CTGCTGGAGGCGGAGACCATGCAGCACATCTTCCTGAACAACTACCAGCTCTGCTCCGAGATCGGGGAGCCCGTCCTGCAGCACTTCGTGCACCTGCTGGCCACGCACGGGCGCCACGTGCAGTACCTGGACTTCCTGCACACCGTCATCAAGGCCGAGGGCAAGTACGTCAAGAAGTGCCAGGACATGATCATGACCGAG
Seq A exon
GTGAGGGCGCGCGGGGGCGCCGGGCTGCCGGGGGGACACGGGGACAGGACTGAGACGCTGGTGGAGCAGAACTCAGGCTGCGGCCGAACAGAGCTGGGCCTGTGGGAGCTCAGGTGCCTGGTAGAATTCAGATCCGAGGCCTGAGAGCGCAGACACTCGTTCTTCATGTGTTATGCATCGTTGTTGACTTACAAATCATGGCGCACCTGCTGCGTGCCAGACGCCGTGTACCCCTGGGGAGACCACTCCAGGACGAGCTCCGCGGGCAGGAGCCGCAGCAGGGCCGGGGCACAGCCTTTGTGCGTGTTGCCAGGGCCCCGGGGTCTGGCGCATAGTAGGTGCTCAGTAAAGAAGAATGTGGGGCTGAGCCTAAATCTGGAACAGACATGCTCTCTGCCCCGGAGCATCTTACAGCCTGGGGAGGGGCAGGGAGAGAAAGGAGCAAATGCCAGAGGGAGATGAGGAACTCAGTGAGCAGTGGGTCCGGGAGTGCCATGCGGGGTTCATTCCCAACTGCGATTGTTATATTAACTGTGAAGAGCAGAATTGCTGACATGAGAGGGACGCAGCTTCTGGAGGGTTTAAATTACAGCGGTGGAAGCACAGGAGAGGACAGCATGAGTTGGGCTTACGACAGGCTTCCTGGCGGAGGTGCCTCTGAGACGAGCCCAAGTGGGATTTCTTTCCTTAGGAGAGGAAGGAGGTCCTTCCTGGGTCTGGGGTTCGACGTCCCAGCTCATGGCAGAGGGTCTGTGATACCAGCCAAGGGCCAAGAAACCCCAGACACTCAGGCCGGGGAGGGTTTTCCTGCGTGTTGGGTGCAGGCCGGGCTCAGAGCCCTAGTCCTTCCCGGGGGAGGGCAGGTGAGGGCTGGGGCCCTGGGCCTGCTGGACCGAGGGGCCCGACATGCCCTCTTCCTGCCCACAG
Seq C2 exon
CTGACCAACGCAGGCGACGACGTGGTCGTGTTCTACAACGACAAGGCCTCGCTGGCCCACCTGCTGGACATGATGAAGGCTGCCCGTGACGGCGTGGAGGACCACAGCCCCCTCATGTACCACATCTCCCTGGTGGACCTGCTGGCTGCCTGTGCCGAGGGCAAGAATGTATACACCGAGATCAAGTGCACGTCCCTGCTGCCCCTGGAGGATGTGGTGTCTGTGGTGACACACGAGGACTGCATCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(37.7=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=PD(11.4=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCAGCTCTGCTCCGAGATC
R:
CAGGGACGTGCACTTGATCTC
Band lengths:
357-1284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]