MmuINT0084557 @ mm9
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27243151-27244426:+
Coord C1 exon
chr17:27243151-27243351
Coord A exon
chr17:27243352-27244174
Coord C2 exon
chr17:27244175-27244426
Length
823 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CTGCCTGCCTCCTGTCACAGCTG
3' ss Score
9.06
Exon sequences
Seq C1 exon
CTCCTGGAGGCTGAGACCATGCAGCACATTTTCCTCAACAACTACCAGCTGTGCTCTGAGATCAGCGAGCCGGTGTTGCAACACTTTGTGCACCTGCTGGCCACACACGGGCGCCATGTGCAGTACTTGGACTTCCTGCACACTGTCATCAAGGCTGAGGGCAAGTACGTGAAGAAGTGCCAGGACATGATTATGACCGAG
Seq A exon
GTGAGGGCTGCCTGGGCCACAGGGATCTGGGTGGTGGGGTCCAGGGAGAACCTGGGAAGGGAGAGAGCCAGGAGGACTTGGGATGCTGGGCTCATAGAACTGGTTAGGGCCAGTGGTAATGCACAAATGTCCGTACCTGCAAAACACTGAGAGTGGGGTGAGCCTTAGTGGCAGTCTAGGAGGTCTGTTCCTGGGAGCATCTCAGGGAGGGCCGGGGAGGGCGGGGGCAGAGGCAGTGACGTCAGGGAGATACTACAGCTGCAGCCGTCACCTTGGGCATGTCACCACTGACCTGTGTCATTCATTGGCTGGCTATGAGAGGGAGGAAGGGAGGACACACCTCAGGTTCAGTGCACACTCTGGAGGCTGAGGACATTCAGACACTTTTTGGATCCAGCGTCAAGGTCTCCGATGGAAGAGGCCAGGACACATCAGCCAAGGAACCCCAAAACTCAGGCAGGAATTCAGGCGTGTTGGCTCACATCTGTGAATGGCCCATGACTATCTATAGCTCTAAGTTCAAGGGATCTGATGCCCTCTTCTGACCTCTATGGGTATTGCACACGTGCCGTGAACAGACCTACATGCAAGCAAAACACCCGTACACGTAAAATAAAAACCAATAATTAAAGGAAGAGTTCAAGGTTATCCTCAGCTACGCAGTATTTTGATGAATGAATCTGTTTCAGAAGTCCCAAACTTTAAGCATGGGTATGAGGTCCTAGCTGGGGTCACGGTCTTCTTTTCCTGACAAGCCTAGGAGAGAGGTGGTGCCTGGGGCTGTTGGACGAGGGCTCTGACTCCTGCCTGCCTCCTGTCACAG
Seq C2 exon
CTGACCAATGCAGGTGACGACGTGGTGGTGTTCTACAACGACAAGGCCTCTCTGGCTCATCTGTTGGACATGATGAAGGCAGCCAGAGATGGCGTGGAGGACCACAGCCCTCTCATGTATCACATCTCCCTGGTGGACCTGCTGGCTGCCTGTGCAGAGGGCAAGAACGTCTACACAGAGATCAAGTGCACCTCCCTCTTGCCTCTAGAGGACGTGGTGACTGTGGTCACCCACGAGGATTGTATCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-Itpr3:NM_080553:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(37.7=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=PD(11.4=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACACTTTGTGCACCTGCTG
R:
CCACAGTCACCACGTCCTCTA
Band lengths:
349-1172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: