DreINT0083734 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21285022-21287514:+
Coord C1 exon
chr8:21285022-21285222
Coord A exon
chr8:21285223-21287262
Coord C2 exon
chr8:21287263-21287514
Length
2040 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
ATGATGTTTTTCACTATTAGCTT
3' ss Score
5.83
Exon sequences
Seq C1 exon
CTCCTGGAGGCAGAAACAATGCAGCAGATTTTCAGCAATAATTTCCAGCTCTGTTCTGAGATCAGCGAGTCTGTGCTGCATCATTTCATACATTGCCTGGCCACACAAGGCCGGCACATTCAGTACCTCAACTTTCTGCACACCATCATTAAGGCCGAAGGGAAATATGTGAAGAAATGCCAAGACATGATCATGACTGAG
Seq A exon
GTTTGTAACCTTGGACTGTTGGTACAGTATGTTTTGATTTTAACCATTTGTTTGACCATCATTATGTTATTTTATTTTATTTTTATTTATTTTATTTTATTTCATTTTATTTTATTTTATTTTGAAATTACATTGTTAATGGAGAAAATATTAATATAAAGACTACATTTTTTTACAACAAAATAAATAATGCTAATAAATAATTTTTTGTTCCCCTCACTCCACCACAAATCATTTATATTTGACCAGATTCAGGACAGATAAAAAAGTATAAAACAATATGTTGTGACATTCAGTGTAAACATCATTTATTGTAAACCTCAAACTACTTTAAATGAGTTTATTAAAATTAAAACTGAAACTAATGATGTGTGGCAAATCCACAGCTACTCCCAGTTTTCTCTCATTTAGCTCAAATACAACTGTGTACATGCACATTTTAGAATGTTAATTGCACTATGTAGTTTTTGTAAAGCTGTAAAAAGTCAAGTGAACCTTATATAGTGTAGATTGTGTCAAAGCCACATTATTGAACAGAAAAAGTATAAAAAATCCATAAAATATTTCAGATTATATTCCATATTCAGCACAACAATCAGGTCACAGAGTAGTTGTTGAATGCTAGTCTATAGTATTTTAGTTCAAAAGAGATCAGTTTCAGTTCACTTTAATACAAGTATAAACACAGTTTAAAATGAATGTTAACAGATAAGAAACATTTTTTTGTTTTATAATCTTATGATAAATCTTTTTTATATACTTAATTTTTAATAAATTTGTAGGAACATATAACCAGTGGGGACAAAATTAACTAACCAACTAACTAACTAACTAACTAACTTACTAACTAACTAACTTACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACTAACAAAAACTAAATTTATATTCATATATACGTACACAAATACATCCATTCCACATGAACAGTTGAAGTCAGACTTTTTGAATTCAATTTTTTTTTCTTTTTTAAATATTTCCCAAATGGTGTTTAAGAGAGCAAGGAAATTGTCTGATAATATTTTTTCTTTTGGAGAAAGTCTTATTTGTTTTATTTCGGCTAGAATAAAAGCAGATTTTTTAAACATCATTTTAGAGACAAAATTATTAGCCCCTTTAAGCTATATATTTTTTCGATAGTCTACAGAACAAACCATCGTTATACAGTAACTTGCCTATAACTTGCTAATAATTCTGACTTCAACTGTATATCTATATACATACTGTATATCTAAATACATACATTTCTAAAAAAAAAAAAAAAAAAAACCTTTCCAAGTTAATAAATAAATAAATCGAACAAGTTTAAAATAGAATAAAAGGTTGCCAAAGATATTCTCTCTCAATCTTATAATGAATCCTCATTCTTGATAAGCTTGCTCTACCATACATTTGGGCATTAGTTAATGAAAACAACCTGGACACTAAGGTGGCACTGTGGCTCAGTGGTTAGTACTTTCGCCTCACATTAAGAAGGGCGCTGGTTCAAGTCCCAGCTGTGTCAGTTGCAATTTCTGTGTGGAGTTTGCATGTTCTGCCCATATTCACGTGGGTTTCCTCTGGATGCTCTGGTTTCCCCCACAAGTTCAAACTCATGCGCTATAGGTGAATTGGATGAACTAAATTGGCCGTAGCATATGATTGTGTGTGTGTATGGGTGTTTCCTAGTTCTGGGTTGTGGCTGGAAGGGCATCTGCTGTATAAAACATAAGCTGGAATAGTTGGTGGTTCATTCCGCTGTGGCAACCTCAGATATATCATAGACTAAGCCGAAGAAAAATGAATGAATGAACATGTACACTTAGGGATATTATTTTTTGAATAGCTTTTTAAAATCATTTTAAACATTAATGTAGGGATGTTGGTTGTGTATGAATGGATTGATATAGAAACATGTTTTTGTTTGTTTATTTGTGTTCATGCAGAAAACTTTAATCAGTTGTAAATAAAATCAGTAACGAATAAACGTCACCACAATGATGTTTTTCACTATTAG
Seq C2 exon
CTTACTAGTGCGGGGGATGATGTGGTCGTCCTCTACACGGATGACACGTCGTTTAACACCATGGTGGAGCTGATGACCCAGTCGAGGGAAGGGGTGAAGGACGACAGCCCGCTGCGCTACCATATCTCTCTGGTGGAGCTGCTGGCTGCATGTGCTGAGGGGAAAAACGTCTACACTGAGATCAAGTGCACATCTCTGCTGCCCCTAGAGGAAATGGTCAAAGTAATCACACATGAAGACTGCATAACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(36.1=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=PD(10.9=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]