GgaINT0141532 @ galGal4
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr26:4575376-4576171:-
Coord C1 exon
chr26:4575971-4576171
Coord A exon
chr26:4575628-4575970
Coord C2 exon
chr26:4575376-4575627
Length
343 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
CTGGTGACTCTTCCCAACAGCTC
3' ss Score
8.62
Exon sequences
Seq C1 exon
CTCCTGGAGGCTGAGACAATGCAGCACATCTTCCTCAACAACTACCAGCTCTGCTCAGAGATCAATGAGACGGTGCCACAGCACTTCATCCACTGCGTGGCCACCCATGGCCGCCATGTGCAGTACCTGGACTTCCTGCACACCATCATCAAGGCTGAGGGCAAGTACGTCAAGAAGTGTCAGGACATGATCATGACCGAG
Seq A exon
GTGAGCACCTCTTCTGCTCGTGGGTTGTAAGCACAGGGCATAGCTCCTAGGAGGAGCATGGTTATCTTCTCCTTTGGGCAAGAGCCTTCTCAACCACATGGTGATTCCTCCCTGGAGTTGGAAGAAGTATCTCTAAGAGATGCAAGGTCTGAGAGCCAATAACCACTTTGGGGTCCTACAGGTTGTGATTTTTGATTGCGCTGCAAACACCCAGTTTTCCCCATAAACACACAAGCCTTTCACCTCACCCTGGGTGCTCCATCTCATCACCCCAGTGCAGAAGATGTCATTGTGAGGTTTCTCATCCTTCTCTGGAGCAGTGACTGGTGACTCTTCCCAACAG
Seq C2 exon
CTCACCAATGCTGGGGACGACGTGGTTGTTTTCTACAATGACAAGGCATCGCTGGCCACCCTGCTGGAGATGATGACGGCAGCCAGGGATGGGGTGGAGGAGAACAGCCCACTGATGTACCACATCTCATTGGTGGACCTGCTGGCTGCGTGCGCTGAGGGCAAGAACGTCTACACCGAGATCAAGTGTACATCCCTGCTGCCCTTGGAGGATGTGGTGCGGGTGGTGACCCACGAGGACTGCATCACGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=FE(37.7=100)
A:
NA
C2:
PF0136516=RYDR_ITPR=PD(11.4=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAATGAGACGGTGCCACAG
R:
GGCAGCAGGGATGTACACTTG
Band lengths:
344-687
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]