BtaINT0078582 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7740513-7741096:+
Coord C1 exon
chr23:7740513-7740764
Coord A exon
chr23:7740765-7740970
Coord C2 exon
chr23:7740971-7741096
Length
206 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
TCCAAGTCCTGCCTGCGCAGGTG
3' ss Score
6.43
Exon sequences
Seq C1 exon
CTGACCAACGCAGGCGACGACGTGGTCGTGTTCTACAACGACAAGGCCTCGCTGGCCCACCTGCTGGACATGATGAAGGCTGCCCGTGACGGCGTGGAGGACCACAGCCCCCTCATGTACCACATCTCCCTGGTGGACCTGCTGGCTGCCTGTGCCGAGGGCAAGAATGTATACACCGAGATCAAGTGCACGTCCCTGCTGCCCCTGGAGGATGTGGTGTCTGTGGTGACACACGAGGACTGCATCACCGAG
Seq A exon
GTGGGGACGCAAGTGTGGGGGAGGCGGGCCGGGGCAGCCCCTCGGTCCTGCTCAGGGAGGGAAGGGACGGGGCTGGGAGGTGGGGAGGCGGAGGAGAGGCTGGCAGAGGAGCCGGGGGAGGTCGGGCGGAAGCACGAGAGGGAGAGCCTGGCCAGGGCTGGGGCTGGGTGCTACTGAGCCCTGACCTCCAAGTCCTGCCTGCGCAG
Seq C2 exon
GTGAAAATGGCCTATGTGAATTTCGTGAACCACTGCTACGTGGACACGGAGGTGGAGATGAAGGAGATCTACACCAGCAACCACATCTGGACCCTCTTTGAGAACTTCACCCTGGACATGGCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(11.4=23.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTCGTGTTCTACAACGA
R:
CTCCTTCATCTCCACCTCCGT
Band lengths:
298-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]