DreINT0083735 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21287263-21288084:+
Coord C1 exon
chr8:21287263-21287514
Coord A exon
chr8:21287515-21287958
Coord C2 exon
chr8:21287959-21288084
Length
444 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GATTCCTCTGTATCTTGCAGGTG
3' ss Score
11.01
Exon sequences
Seq C1 exon
CTTACTAGTGCGGGGGATGATGTGGTCGTCCTCTACACGGATGACACGTCGTTTAACACCATGGTGGAGCTGATGACCCAGTCGAGGGAAGGGGTGAAGGACGACAGCCCGCTGCGCTACCATATCTCTCTGGTGGAGCTGCTGGCTGCATGTGCTGAGGGGAAAAACGTCTACACTGAGATCAAGTGCACATCTCTGCTGCCCCTAGAGGAAATGGTCAAAGTAATCACACATGAAGACTGCATAACTGAG
Seq A exon
GTAAACACACAATTAAGCAGGTTCATTTTTAAGAATCATGTTCAGCCTCACTATACTGTTTAATGTGATGGAGGAGCCAGTTAATGGATTCATTTAAATTTAAAGTTTGGACCATTCTCTGTAAACCATAGAGATGGTTGTGTGTGAAAATCCCAGTAGATCAGCAGTTTCTGAAATACTCAGACCAGCCTGTCTGGCACCAACAACCATGCCACTTTCAAAGTTGCTTAAATCACCTTTCTTCCCCATTCTGATGCTCGGTTTGACCTGCAGCACATCGTCTTGACCATATCTACATGTCTAAATGCATTGAGTTGCAGCTATGCGATTGACTGATTAATAATTTGTGTTAACGAGCAGTTGGACAGGTGTACCTAATAAAGTGGCCGGTGAGTGTATATTGTGATGAATCAAAAAACTACAGGATTCCTCTGTATCTTGCAG
Seq C2 exon
GTGAAAATTGCTTATGTGAACTTTGTGAACCACTGCTATGTGGACACAGAAGTGGAGATGAAGGAGATCTACACCAGCAACCACATCTGGAAGCTTTTTGAGAACTTCACTGTAGATATGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(10.9=23.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTAGTGCGGGGGATGATGT
R:
AGCTTCCAGATGTGGTTGCTG
Band lengths:
345-789
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]