GgaINT0141533 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4454302-4454773:-
Coord C1 exon
chr26:4454522-4454773
Coord A exon
chr26:4454428-4454521
Coord C2 exon
chr26:4454302-4454427
Length
94 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
ACTCCCTCCCTCCCCGGCAGGTG
3' ss Score
12.01
Exon sequences
Seq C1 exon
CTCACCAATGCTGGGGACGACGTGGTTGTTTTCTACAATGACAAGGCATCGCTGGCCACCCTGCTGGAGATGATGACGGCAGCCAGGGATGGGGTGGAGGAGAACAGCCCACTGATGTACCACATCTCATTGGTGGACCTGCTGGCTGCGTGCGCTGAGGGCAAGAACGTCTACACCGAGATCAAGTGTACATCCCTGCTGCCCTTGGAGGATGTGGTGCGGGTGGTGACCCACGAGGACTGCATCACGGAG
Seq A exon
GTAAGGGCTGCCGGGTGAGGGGGGTGTTGGTGGCTCTGTTCTGTTTTCTATTCCTCTGATGGTGCCTGCACCCCACTCCCTCCCTCCCCGGCAG
Seq C2 exon
GTGAAGATGGCCTATGTGAACTTTGTCAACCACTGCTACGTGGACACGGAGGTGGAGATGAAAGAGATCTACACCAGCAATCACATCTGGACTCTCTTTGAGAACTTCACCCTGGACATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(11.4=23.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCTTGGAGGATGTGGT
R:
GCCATGTCCAGGGTGAAGTTC
Band lengths:
176-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]