HsaINT0083317 @ hg38
Intron Retention
Gene
ENSG00000096433 | ITPR3
Description
inositol 1,4,5-trisphosphate receptor type 3 [Source:HGNC Symbol;Acc:HGNC:6182]
Coordinates
chr6:33679882-33680454:+
Coord C1 exon
chr6:33679882-33680133
Coord A exon
chr6:33680134-33680328
Coord C2 exon
chr6:33680329-33680454
Length
195 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGG
5' ss Score
4.41
3' ss Seq
ACCTCCCGCCCACTGCCCAGGTG
3' ss Score
6.51
Exon sequences
Seq C1 exon
CTGACCAATGCAGGTGACGATGTGGTCGTGTTCTACAATGATAAGGCATCGCTGGCCCACCTGCTGGACATGATGAAGGCCGCCCGCGACGGCGTGGAGGACCACAGCCCCCTCATGTACCACATTTCCCTGGTGGACCTGCTGGCCGCCTGTGCCGAGGGCAAAAACGTCTACACTGAGATCAAGTGCACCTCCCTGCTGCCGCTGGAGGACGTGGTGTCTGTGGTGACGCATGAGGACTGCATCACTGAG
Seq A exon
GTGGGGATCGGGAGACTGGGCAAGACGGCTGGAGATGGGGCGAAGGGGTGGGTAAAGCCACGGGACAGGAAGAGTGGGTGAAGCAAAGCCAGGGAAGTGGGCAGGAACCGGAGGCCAGGGGACAGGAGCATTGTGGCAGGGAGAGCCTGGCCAGGCGGCCCTGCTTGCGCCCCTGACCTCCCGCCCACTGCCCAG
Seq C2 exon
GTGAAAATGGCCTATGTGAACTTCGTGAACCACTGCTACGTGGACACGGAGGTGGAGATGAAGGAGATCTACACCAGCAACCACATCTGGACGCTCTTTGAGAACTTCACCCTGGACATGGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000096433:ENST00000374316:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0136516=RYDR_ITPR=PD(11.4=23.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTTCCCTGGTGGACCTG
R:
GCCATGTCCAGGGTGAAGTTC
Band lengths:
254-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development