BtaINT0078592 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7746111-7746605:+
Coord C1 exon
chr23:7746111-7746285
Coord A exon
chr23:7746286-7746420
Coord C2 exon
chr23:7746421-7746605
Length
135 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGG
5' ss Score
6.23
3' ss Seq
CACCAGGCCTCACCCCGCAGGCC
3' ss Score
6.9
Exon sequences
Seq C1 exon
AAATCCTTCTACAACCTGATGACGAGCGACAAGAAGTCAGAGCGCTTCTTCAAGGTGCTGCACGACCGCATGAAGCGAGCCCAGCAGGAGACCAAGTCCACGGTGGCCGTCAACATGAGCGACCTGGGCAGCCAGCCGCGTGAGGACCGTGAGCAGGCAGACCCCACCTCCAAAG
Seq A exon
GTCAGGCTCAGGGGGCCCCAGGGATGTGGGCTGGGGCGGGAGACAAGGGCCGAGTTGTGAGCGTGGGAATGGAGGGTGAGGGTGAGGGTATGAGCGCTCCCAGCAGCCCCAGCCTCACCAGGCCTCACCCCGCAG
Seq C2 exon
GCCGCGTGGCCTCCTTCTCGATGCCCAGCTCCTCATCCCGCTATGCGTTGGGCCCCAGCCTGCGCCGGGGGCACGAGGTGGGCGAACGCGTGCAGAGCAACGAGATGGGCACGTCCGTGCTCATCATGCAGCCCATACTGCGCTTTCTGCAGCTGCTGTGTGAGAACCACAACCGGGACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245:ENSBTAT00000053490:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.2=46.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTTCAAGGTGCTGCACGA
R:
GTGCCCATCTCGTTGCTCTG
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]