MmuINT0084568 @ mm9
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27250436-27250870:+
Coord C1 exon
chr17:27250436-27250610
Coord A exon
chr17:27250611-27250688
Coord C2 exon
chr17:27250689-27250870
Length
78 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGAG
5' ss Score
1.51
3' ss Seq
CATCAAGGCTCTCCCCACAGGCC
3' ss Score
8.22
Exon sequences
Seq C1 exon
AAGTCTTTCTACAACCTGATGACAAGTGACAAGAAGTCGGAGCGCTTCTTCAAGGTGCTTCATGACCGCATGAAGCGCGCCCAGCAGGAGACCAAGTCCACGGTCGCTGTCAACATGAGCGACCTGGGCAGCCAGCCTCGTGAGGACCGGGAGCCGGCAGATCCTGCCACCAAAG
Seq A exon
GTGGAGCTCCGGGCAGATATATACAGGGTATGGGGTACCTCACAGGTGACCCCGACCTCATCAAGGCTCTCCCCACAG
Seq C2 exon
GCCGCGTGTCCTCCTTCTCCATGCCCAGCTCCTCCCGCTATTTGCTGGGCCTCGGCTTGCACCGAGGGCACGACATGAGCGAGCGGGCGCAGAACAACGAGATGGGGACCTCGGTGCTGATCATGCGGCCCATCCTGCGCTTCCTGCAGCTGCTGTGTGAGAACCACAACCGTGACCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644-Itpr3:NM_080553:40
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.593 A=NA C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF084546=RIH_assoc=PU(24.8=49.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAACATGAGCGACCTGG
R:
AGGTCCCCATCTCGTTGTTCT
Band lengths:
180-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: